MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

(2019) Kyo Bin Kang et al.   PLANT JOURNAL

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information

(2019) Kai Dührkop et al.   NATURE METHODS

CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification

(2019) Yannick Djoumbou-Feunang et al.   Metabolites

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.

(2019) Madeleine Ernst et al.   Frontiers in Plant Science

METLIN: A Technology Platform for Identifying Knowns and Unknowns

(2018) Carlos Guijas et al.   ANALYTICAL CHEMISTRY

ChemDistiller: an engine for metabolite annotation in mass spectrometry

(2018) Ivan Laponogov et al.   BIOINFORMATICS

Chemical language and warfare of bacterial natural products in bacteria–nematode–insect interactions

(2018) Yi-Ming Shi et al.   NATURAL PRODUCT REPORTS

Propagating annotations of molecular networks using in silico fragmentation

(2018) Ricardo R. da Silva et al.   PLoS Computational Biology

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

(2018) Alexey Gurevich et al.   Nature Microbiology

Rhabdopeptide/Xenortide-like Peptides from Xenorhabdus innexi with Terminal Amines Showing Potent Antiprotozoal Activity

(2018) Lei Zhao et al.   ORGANIC LETTERS

MetGem Software for the Generation of Molecular Networks Based on the t-SNE Algorithm

(2018) Florent Olivon et al.   ANALYTICAL CHEMISTRY

Metwork: a web server for natural products anticipation

(2018) Yann Beauxis et al.   BIOINFORMATICS

Environmentally Friendly Procedure Based on Supercritical Fluid Chromatography and Tandem Mass Spectrometry Molecular Networking for the Discovery of Potent Antiviral Compounds from Euphorbia semiperfoliata

(2017) Louis-Félix Nothias et al.   JOURNAL OF NATURAL PRODUCTS

Significance estimation for large scale metabolomics annotations by spectral matching

(2017) Kerstin Scheubert et al.   Nature Communications

Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus

(2017) Nicholas J. Tobias et al.   Nature Microbiology

Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies

(2016) Hendrik Treutler et al.   ANALYTICAL CHEMISTRY

Girdling and gibberellic acid effects on yield and quality of a seedless red table grape for saving irrigation water supply

(2016) Pasquale Crupi et al.   EUROPEAN JOURNAL OF AGRONOMY

Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols

(2016) Max Crüsemann et al.   JOURNAL OF NATURAL PRODUCTS

Natural Products as Sources of New Drugs from 1981 to 2014

(2016) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

(2016) Justin J. J. van der Hooft et al.   Metabolomics

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Dereplication of peptidic natural products through database search of mass spectra

(2016) Hosein Mohimani et al.   Nature Chemical Biology

Oxidation and cyclization of casbene in the biosynthesis ofEuphorbiafactors from mature seeds ofEuphorbia lathyrisL.

(2016) Dan Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topic modeling for untargeted substructure exploration in metabolomics

(2016) Justin Johan Jozias van der Hooft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

(2016) Yannick Djoumbou Feunang et al.   Journal of Cheminformatics

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

Do Mediterranean-type ecosystems have a common history?-Insights from the Buckthorn family (Rhamnaceae)

(2015) Renske E. Onstein et al.   EVOLUTION

Insights on profiling of phorbol, deoxyphorbol, ingenol and jatrophane diterpene esters by high performance liquid chromatography coupled to multiple stage mass spectrometry

(2015) Louis-Félix Nothias-Scaglia et al.   JOURNAL OF CHROMATOGRAPHY A

Searching molecular structure databases with tandem mass spectra using CSI:FingerID

(2015) Kai Dührkop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating the dark matter in metabolomics: Fig. 1.

(2015) Ricardo R. da Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Silico Prediction and Automatic LC–MSn Annotation of Green Tea Metabolites in Urine

(2014) Lars Ridder et al.   ANALYTICAL CHEMISTRY

MS2Analyzer: A Software for Small Molecule Substructure Annotations from Accurate Tandem Mass Spectra

(2014) Yan Ma et al.   ANALYTICAL CHEMISTRY

Euphorbia Diterpenes: Isolation, Structure, Biological Activity, and Synthesis (2008–2012)

(2014) Andrea Vasas et al.   CHEMICAL REVIEWS

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra

(2014) Felicity Allen et al.   NUCLEIC ACIDS RESEARCH

Structure and Biosynthesis of Xenoamicins from EntomopathogenicXenorhabdus

(2013) Qiuqin Zhou  et al.   CHEMISTRY-A EUROPEAN JOURNAL

MetFusion: integration of compound identification strategies

(2013) Michael Gerlich et al.   JOURNAL OF MASS SPECTROMETRY

Biosynthetic rivalry of o-aminophenol-carboxylic acids initiates production of hemi-actinomycins in Streptomyces antibioticus

(2013) Ivana Crnovčić et al.   RSC Advances

α-Linolenic acid and risk of cardiovascular disease: a systematic review and meta-analysis

(2012) An Pan et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Xentrivalpeptides A–Q: Depsipeptide Diversification in Xenorhabdus

(2012) Qiuqin Zhou et al.   JOURNAL OF NATURAL PRODUCTS

Phylogenetics and the evolution of major structural characters in the giant genus Euphorbia L. (Euphorbiaceae)

(2012) James W. Horn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

(2011) Carsten Kuhl et al.   ANALYTICAL CHEMISTRY

Spectral trees as a robust annotation tool in LC–MS based metabolomics

(2011) Justin J. J. van der Hooft et al.   Metabolomics

Structure elucidation and biosynthesis of lysine-rich cyclic peptides in Xenorhabdus nematophila

(2011) Sebastian W. Fuchs et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Polyphenol Identification Based on Systematic and Robust High-Resolution Accurate Mass Spectrometry Fragmentation

(2010) Justin J. J. van der Hooft et al.   ANALYTICAL CHEMISTRY

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Chemical and Pharmacological Research of the Plants in GenusEuphorbia

(2008) Qing-Wen Shi et al.   CHEMICAL REVIEWS

Metabolomics: Dark matter

(2008)   NATURE

Clustering Millions of Tandem Mass Spectra

(2007) Ari M. Frank et al.   JOURNAL OF PROTEOME RESEARCH