Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

Propagating annotations of molecular networks using in silico fragmentation

(2018) Ricardo R. da Silva et al.   PLoS Computational Biology

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

(2017) Satria A. Kautsar et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2017) Dennis A Benson et al.   NUCLEIC ACIDS RESEARCH

Global chemical analysis of biology by mass spectrometry

(2017) Alexander A. Aksenov et al.   Nature Reviews Chemistry

Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication

(2016) Pierre-Marie Allard et al.   ANALYTICAL CHEMISTRY

PlantMAT: A Metabolomics Tool for Predicting the Specialized Metabolic Potential of a System and for Large-Scale Metabolite Identifications

(2016) Feng Qiu et al.   ANALYTICAL CHEMISTRY

Beyond climate: convergence in fast evolving sclerophylls in Cape and Australian Rhamnaceae predates the mediterranean climate

(2016) Renske E. Onstein et al.   JOURNAL OF ECOLOGY

Cytotoxic Ceanothane- and Lupane-Type Triterpenoids from the Roots of Ziziphus jujuba

(2016) Kyo Bin Kang et al.   JOURNAL OF NATURAL PRODUCTS

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Cyclopeptide alkaloids

(2016) Emmy Tuenter et al.   PHYTOCHEMISTRY REVIEWS

Topic modeling for untargeted substructure exploration in metabolomics

(2016) Justin Johan Jozias van der Hooft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent evolution of caffeine in plants by co-option of exapted ancestral enzymes

(2016) Ruiqi Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic relationships within the cosmopolitan buckthorn family (Rhamnaceae) support the resurrection of Sarcomphalus and the description of Pseudoziziphus gen. nov.

(2016) Frank Hauenschild et al.   TAXON

Analysis of the cosmopolitan buckthorn genera Frangula and Rhamnus s.l. supports the description of a new genus, Ventia

(2016) Frank Hauenschild et al.   TAXON

Phylogeny of theRosidae: A dense taxon sampling analysis

(2016) Miao Sun et al.   Journal of Systematics and Evolution

The WEIZMASS spectral library for high-confidence metabolite identification

(2016) Nir Shahaf et al.   Nature Communications

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

(2016) Yannick Djoumbou Feunang et al.   Journal of Cheminformatics

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

A specialized flavone biosynthetic pathway has evolved in the medicinal plant, Scutellaria baicalensis

(2016) Q. Zhao et al.   Science Advances

Do Mediterranean-type ecosystems have a common history?-Insights from the Buckthorn family (Rhamnaceae)

(2015) Renske E. Onstein et al.   EVOLUTION

Searching molecular structure databases with tandem mass spectra using CSI:FingerID

(2015) Kai Dührkop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating the dark matter in metabolomics: Fig. 1.

(2015) Ricardo R. da Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing

(2014) Madeleine Ernst et al.   NATURAL PRODUCT REPORTS

Super Natural II—a database of natural products

(2014) Priyanka Banerjee et al.   NUCLEIC ACIDS RESEARCH

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra

(2014) Felicity Allen et al.   NUCLEIC ACIDS RESEARCH

Systematic Structural Characterization of Metabolites inArabidopsisvia Candidate Substrate-Product Pair Networks

(2014) Kris Morreel et al.   PLANT CELL

The complex jujube genome provides insights into fruit tree biology

(2014) Meng-Jun Liu et al.   Nature Communications

Metabolomics for unknown plant metabolites

(2013) Ryo Nakabayashi et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

MS/MS networking guided analysis of molecule and gene cluster families

(2013) D. D. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Natural products in drug discovery

(2008) A HARVEY   DRUG DISCOVERY TODAY