High-Throughput Recovery and Characterization of Metagenome-Derived Glycoside Hydrolase-Containing Clones as a Resource for Biocatalyst Development

Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

(2019) William Helbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome

(2018) Zachary Armstrong et al.   ISME Journal

Structural and mechanistic analysis of a β-glycoside phosphorylase identified by screening a metagenomic library

(2018) Spencer S. Macdonald et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Synthesis of azido-deoxy and amino-deoxy glycosides and glycosyl fluorides for screening of glycosidase libraries and assembly of substituted glycosides

(2018) Hong-Ming Chen et al.   CARBOHYDRATE RESEARCH

A Bacteroidetes locus dedicated to fungal 1,6-β-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-β-glucanase

(2017) Max J. Temple et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Remarkable Reactivity Differences between Glucosides with Identical Leaving Groups

(2017) Tianmeng Duo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

(2017) Didier Ndeh et al.   NATURE

Microbial glycoside hydrolases as antibiofilm agents with cross-kingdom activity

(2017) Brendan D. Snarr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides

(2017) Kazune Tamura et al.   Cell Reports

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

(2016) Keith Mewis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes

(2016) Niels W. Hanson et al.   BIOINFORMATICS

A GH115 α-glucuronidase from Schizophyllum commune contributes to the synergistic enzymatic deconstruction of softwood glucuronoarabinoxylan

(2016) Lauren S. McKee et al.   Biotechnology for Biofuels

Seasonal Microbial Population Shifts in a Bioremediation System Treating Metal and Sulfate-Rich Seepage

(2016) Susan Baldwin et al.   Minerals

Exopolysaccharide biosynthetic glycoside hydrolases can be utilized to disrupt and prevent Pseudomonas aeruginosa biofilms

(2016) P. Baker et al.   Science Advances

MetaPathways v2.5: quantitative functional, taxonomic and usability improvements: Fig. 1.

(2015) Kishori M. Konwar et al.   BIOINFORMATICS

Biocatalysts for biomass deconstruction from environmental genomics

(2015) Zachary Armstrong et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples

(2015) Boonfei Tan et al.   ISME Journal

Characterization of thePseudomonas aeruginosaGlycoside Hydrolase PslG Reveals That Its Levels Are Critical for Psl Polysaccharide Biosynthesis and Biofilm Formation

(2015) Perrin Baker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

Glycan complexity dictates microbial resource allocation in the large intestine

(2015) Artur Rogowski et al.   Nature Communications

Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry

(2014) Richard A. Heins et al.   ACS Chemical Biology

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Structure of Pneumococcal Peptidoglycan Hydrolase LytB Reveals Insights into the Bacterial Cell Wall Remodeling and Pathogenesis

(2014) Xiao-Hui Bai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

(2014) Johan Larsbrink et al.   NATURE

Synthesis of Glycans and Glycopolymers Through Engineered Enzymes

(2013) Zachary Armstrong et al.   BIOPOLYMERS

Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common

(2013) Dongshan An et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle

(2013) Jody J Wright et al.   ISME Journal

Biomining active cellulases from a mining bioremediation system

(2013) Keith Mewis et al.   JOURNAL OF BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

(2012) Martin Hartmann et al.   ISME Journal

The long term operation of a biologically based treatment system that removes As, S and Zn from industrial (smelter operation) landfill seepage

(2011) Mattes Al et al.   APPLIED GEOCHEMISTRY

Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases

(2011) Luen-Luen Li et al.   Biotechnology for Biofuels

The art and design of functional metagenomic screens

(2011) Marcus Taupp et al.   CURRENT OPINION IN BIOTECHNOLOGY

Methanogenic toluene metabolism: community structure and intermediates

(2011) S. Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals

(2011) Shishir P.S. Chundawat et al.   Annual Review of Chemical and Biomolecular Engineering

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The Biochemistry and Structural Biology of Plant Cell Wall Deconstruction

(2010) H. J. Gilbert   PLANT PHYSIOLOGY

An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol

(2009) Huanting Liu et al.   BMC BIOTECHNOLOGY

Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

(2009) Martin Hartmann et al.   ENVIRONMENTAL MICROBIOLOGY

Large Insert Environmental Genomic Library Production

(2009) Marcus Taupp et al.   Jove-Journal of Visualized Experiments