The structure of the influenza A virus genome

Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for replication

(2018) Graham D. Williams et al.   Nature Communications

Mini viral RNAs act as innate immune agonists during influenza virus infection

(2018) Aartjan J. W. te Velthuis et al.   Nature Microbiology

Visualization of chemical modifications in the human 80S ribosome structure

(2017) S. Kundhavai Natchiar et al.   NATURE

Genome-wide analysis of influenza viral RNA and nucleoprotein association

(2017) Nara Lee et al.   NUCLEIC ACIDS RESEARCH

Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2

(2017) Steven Busan et al.   RNA

Structural insights into RNA synthesis by the influenza virus transcription-replication machine

(2017) Alexander Pflug et al.   VIRUS RESEARCH

Constraints, Drivers, and Implications of Influenza A Virus Reassortment

(2017) Anice C. Lowen   Annual Review of Virology

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

(2016) Jong Ghut Ashley Aw et al.   MOLECULAR CELL

Influenza virus RNA polymerase: insights into the mechanisms of viral RNA synthesis

(2016) Aartjan J. W. te Velthuis et al.   NATURE REVIEWS MICROBIOLOGY

Computational and molecular analysis of conserved influenza A virus RNA secondary structures involved in infectious virion production

(2016) Yuki Kobayashi et al.   RNA Biology

Influenza NA and PB1 Gene Segments Interact during the Formation of Viral Progeny: Localization of the Binding Region within the PB1 Gene

(2016) Brad Gilbertson et al.   Viruses-Basel

A conserved influenza A virus nucleoprotein code controls specific viral genome packaging

(2016) Étori Aguiar Moreira et al.   Nature Communications

The architecture of the spliceosomal U4/U6.U5 tri-snRNP

(2015) Thi Hoang Duong Nguyen et al.   NATURE

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

(2015) Matthew J Smola et al.   Nature Protocols

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Influenza Virus PB1 and Neuraminidase Gene Segments Can Cosegregate during Vaccine Reassortment Driven by Interactions in the PB1 Coding Region

(2014) J. C. A. Cobbin et al.   JOURNAL OF VIROLOGY

RNA structural constraints in the evolution of the influenza A virus genome NP segment

(2014) Alexander P Gultyaev et al.   RNA Biology

Selective packaging of the influenza A genome and consequences for genetic reassortment

(2014) Marie Gerber et al.   TRENDS IN MICROBIOLOGY

Conserved and host-specific features of influenza virion architecture

(2014) Edward C. Hutchinson et al.   Nature Communications

The Source of the PB1 Gene in Influenza Vaccine Reassortants Selectively Alters the Hemagglutinin Content of the Resulting Seed Virus

(2013) J. C. A. Cobbin et al.   JOURNAL OF VIROLOGY

Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus

(2013) K. Saira et al.   JOURNAL OF VIROLOGY

A functional sequence-specific interaction between influenza A virus genomic RNA segments

(2013) C. Gavazzi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7)

(2013) R. Turner et al.   RNA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The Structure of Native Influenza Virion Ribonucleoproteins

(2012) R. Arranz et al.   SCIENCE

Organization of the Influenza Virus Replication Machinery

(2012) A. Moeller et al.   SCIENCE

Three-dimensional analysis of ribonucleoprotein complexes in influenza A virus

(2012) Takeshi Noda et al.   Nature Communications

Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry

(2012) Edward C. Hutchinson et al.   PLoS Pathogens

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

A supramolecular assembly formed by influenza A virus genomic RNA segments

(2011) Emilie Fournier et al.   NUCLEIC ACIDS RESEARCH

Influenza Virus Evolution, Host Adaptation, and Pandemic Formation

(2010) Jeffery K. Taubenberger et al.   Cell Host & Microbe

Genome packaging in influenza A virus

(2009) E. C. Hutchinson et al.   JOURNAL OF GENERAL VIROLOGY

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Characterisation of influenza A viruses with mutations in segment 5 packaging signals

(2009) Edward C. Hutchinson et al.   VACCINE

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

Mutational Analysis of cis-Acting RNA Signals in Segment 7 of Influenza A Virus

(2008) E. C. Hutchinson et al.   JOURNAL OF VIROLOGY

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY