A chromosome-scale assembly of the major African malaria vector Anopheles funestus

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

(2019) Jay Ghurye et al.   GigaScience

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

Elevated Plasmodium infection rates and high pyrethroid resistance in major malaria vectors in a forested area of Cameroon highlight challenges of malaria control

(2018) Cyrille Ndo et al.   Parasites & Vectors

Systems genetic analysis of inversion polymorphisms in the malaria mosquitoAnopheles gambiae

(2018) Changde Cheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

D-GENIES: dot plot large genomes in an interactive, efficient and simple way

(2018) Floréal Cabanettes et al.   PeerJ

Copy number variation (CNV) and insecticide resistance in mosquitoes: evolving knowledge or an evolving problem?

(2018) David Weetman et al.   Current Opinion in Insect Science

Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae

(2018) Diego Ayala et al.   MOLECULAR ECOLOGY

Improved reference genome of Aedes aegypti informs arbovirus vector control

(2018) Benjamin J. Matthews et al.   NATURE

De novo assembly of haplotype-resolved genomes with trio binning

(2018) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Chromosome inversions and ecological plasticity in the main African malaria mosquitoes

(2017) Diego Ayala et al.   EVOLUTION

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Transcription and Functional Analyses Reveal Heterogeneous Molecular Mechanisms Driving Pyrethroids Resistance in the Major Malaria Vector Anopheles funestus Across Africa

(2017) Jacob M. Riveron et al.   G3-Genes Genomes Genetics

The Anopheles gambiae 2La chromosome inversion is associated with susceptibility to Plasmodium falciparum in Africa

(2017) Michelle M Riehle et al.   eLife

The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications

(2016) Benoît S. Assogba et al.   PLOS BIOLOGY

The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis

(2016) Bradley J Main et al.   PLoS Genetics

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

Multiple Insecticide Resistance in the Malaria Vector Anopheles funestus from Northern Cameroon Is Mediated by Metabolic Resistance Alongside Potential Target Site Insensitivity Mutations

(2016) Benjamin D. Menze et al.   PLoS One

Read clouds uncover variation in complex regions of the human genome

(2015) Alex Bishara et al.   GENOME RESEARCH

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Linkage Disequilibrium and Inversion-Typing of the Drosophila melanogaster Genome Reference Panel

(2015) David Houle et al.   G3-Genes Genomes Genetics

Heterochromatin, histone modifications, and nuclear architecture in disease vectors

(2015) Igor V Sharakhov et al.   Current Opinion in Insect Science

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

(2014) D. E. Neafsey et al.   SCIENCE

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Long-read, whole-genome shotgun sequence data for five model organisms

(2014) Kristi E Kim et al.   Scientific Data

Molecular Systematics and Insecticide Resistance in the Major African Malaria VectorAnopheles funestus

(2013) Maureen Coetzee et al.   Annual Review of Entomology

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

The Evolution of the Anopheles 16 Genomes Project

(2013) Daniel E. Neafsey et al.   G3-Genes Genomes Genetics

The Effect of Genomic Inversions on Estimation of Population Genetic Parameters from SNP Data

(2012) N.-K. Seich al Basatena et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Adaptation to Aridity in the Malaria Mosquito Anopheles gambiae: Chromosomal Inversion Polymorphism and Body Size Influence Resistance to Desiccation

(2012) Caroline Fouet et al.   PLoS One

Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis

(2012) Jianzhong Ma et al.   PLoS One

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Chromosomal and environmental determinants of morphometric variation in natural populations of the malaria vector Anopheles funestus in Cameroon

(2011) Diego Ayala et al.   INFECTION GENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

2La chromosomal inversion enhances thermal tolerance of Anopheles gambiae larvae

(2009) Kyle AC Rocca et al.   MALARIA JOURNAL

Inversion 2La is associated with enhanced desiccation resistance in Anopheles gambiae

(2009) Emilie M Gray et al.   MALARIA JOURNAL

Seasonal distribution of Anopheles funestus chromosomal forms from Burkina Faso

(2009) Wamdaogo M Guelbeogo et al.   MALARIA JOURNAL

Chromosomal plasticity and evolutionary potential in the malaria vector Anopheles gambiae sensu stricto: insights from three decades of rare paracentric inversions

(2008) Marco Pombi et al.   BMC EVOLUTIONARY BIOLOGY