Improved reference genome of Aedes aegypti informs arbovirus vector control

The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti

(2018) Joe Turner et al.   Parasites & Vectors

Extensive Genetic Differentiation between Homomorphic Sex Chromosomes in the Mosquito Vector, Aedes aegypti

(2017) Albin Fontaine et al.   Genome Biology and Evolution

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

Contemporary status of insecticide resistance in the major Aedes vectors of arboviruses infecting humans

(2017) Catherine L. Moyes et al.   PLoS Neglected Tropical Diseases

The Anopheles gambiae 2La chromosome inversion is associated with susceptibility to Plasmodium falciparum in Africa

(2017) Michelle M Riehle et al.   eLife

The neurotranscriptome of the Aedes aegypti mosquito

(2016) Benjamin J. Matthews et al.   BMC GENOMICS

Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility

(2016) Sarah K. Denny et al.   CELL

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins

(2016) Samir Merabet et al.   TRENDS IN GENETICS

Control of Mosquito-Borne Infectious Diseases: Sex and Gene Drive

(2016) Zach N. Adelman et al.   TRENDS IN PARASITOLOGY

The Physical Genome Mapping of Anopheles albimanus Corrected Scaffold Misassemblies and Identified Interarm Rearrangements in Genus Anopheles

(2016) Gleb N. Artemov et al.   G3-Genes Genomes Genetics

The queenslandensis and the type Form of the Dengue Fever Mosquito (Aedes aegypti L.) Are Genomically Indistinguishable

(2016) Gordana Rašić et al.   PLoS Neglected Tropical Diseases

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

The Insect Chemoreceptor Superfamily Is Ancient in Animals

(2015) Hugh M. Robertson   CHEMICAL SENSES

A male-determining factor in the mosquito Aedes aegypti

(2015) A. B. Hall et al.   SCIENCE

A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, Aedes aegypti

(2015) Benjamin R. Evans et al.   G3-Genes Genomes Genetics

Exome and Transcriptome Sequencing of Aedes aegypti Identifies a Locus That Confers Resistance to Brugia malayi and Alters the Immune Response

(2015) Punita Juneja et al.   PLoS Pathogens

Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs

(2014) Vladimir A Timoshevskiy et al.   BMC BIOLOGY

Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

(2014) Gordana Rašić et al.   BMC GENOMICS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Insights into the Preservation of the Homomorphic Sex-Determining Chromosome of Aedes aegypti from the Discovery of a Male-Biased Gene Tightly Linked to the M-Locus

(2014) Andrew Brantley Hall et al.   Genome Biology and Evolution

Functional Characterization of Anopheles Matrix Metalloprotease 1 Reveals Its Agonistic Role during Sporogonic Development of Malaria Parasites

(2014) Evi Goulielmaki et al.   INFECTION AND IMMUNITY

Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

(2014) D. E. Neafsey et al.   SCIENCE

Assembly of the Genome of the Disease Vector Aedes aegypti onto a Genetic Linkage Map Allows Mapping of Genes Affecting Disease Transmission

(2014) Punita Juneja et al.   PLoS Neglected Tropical Diseases

Genetic Control of Mosquitoes

(2013) Luke Alphey   Annual Review of Entomology

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

The Developmental Transcriptome of the Mosquito Aedes aegypti , an Invasive Species and Major Arbovirus Vector

(2013) Omar S. Akbari et al.   G3-Genes Genomes Genetics

Genetic Mapping of Specific Interactions between Aedes aegypti Mosquitoes and Dengue Viruses

(2013) Thanyalak Fansiri et al.   PLoS Genetics

An Integrated Linkage, Chromosome, and Genome Map for the Yellow Fever Mosquito Aedes aegypti

(2013) Vladimir A. Timoshevskiy et al.   PLoS Neglected Tropical Diseases

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Gene amplification and insecticide resistance

(2011) Chris Bass et al.   PEST MANAGEMENT SCIENCE

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Imaginal Discs – A New Source of Chromosomes for Genome Mapping of the Yellow Fever Mosquito Aedes aegypti

(2011) Maria V. Sharakhova et al.   PLoS Neglected Tropical Diseases

SEX LINKAGE AND SEX DETERMINATION IN A MOSQUITO, CULEX MOLESTUS

(2010) B. M. GILCHRIST et al.   HEREDITAS

The role of the Aedes aegypti Epsilon glutathione transferases in conferring resistance to DDT and pyrethroid insecticides

(2010) Nongkran Lumjuan et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

High-resolution cytogenetic map for the African malaria vector Anopheles gambiae

(2010) P. George et al.   INSECT MOLECULAR BIOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Dengue Plaque Reduction Neutralization Test (PRNT) in Primary and Secondary Dengue Virus Infections: How Alterations in Assay Conditions Impact Performance

(2009) Stephen J. Thomas et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS