Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis

Structural characterization of Fis — A transcriptional regulator from pathogenic Pasteurella multocida essential for expression of virulence factors

(2015) Angshuman Bagchi   GENE

Identification and Regulation of a Novel Citrobacter rodentium Gut Colonization Fimbria (Gcf)

(2015) Gustavo G. Caballero-Flores et al.   JOURNAL OF BACTERIOLOGY

Transcriptome analysis of Escherichia coli O157:H7 grown in vitro in the sterile-filtrated cecal content of human gut microbiota associated rats reveals an adaptive expression of metabolic and virulence genes

(2015) Guillaume Le Bihan et al.   MICROBES AND INFECTION

Citrobacter rodentium: infection, inflammation and the microbiota

(2014) James W. Collins et al.   NATURE REVIEWS MICROBIOLOGY

Global Gene Expression Analysis of Long-Term Stationary Phase Effects in E. coli K12 MG1655

(2014) Kotakonda Arunasri et al.   PLoS One

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling

(2013) Shan Li et al.   BMC GENOMICS

Hypervirulent-Host-Associated Citrobacter rodentium Cells Have Poor Acid Tolerance

(2013) Allen Smith et al.   CURRENT MICROBIOLOGY

Bacterial virulence and Fis: adapting regulatory networks to the host environment

(2013) Alexandre Duprey et al.   TRENDS IN MICROBIOLOGY

SspA up-regulates gene expression of the LEE pathogenicity island by decreasing H-NS levels in enterohemorrhagic Escherichia coli

(2012) Anne-Marie Hansen et al.   BMC MICROBIOLOGY

A Distinct Regulatory Sequence Is Essential for the Expression of a Subset of nle Genes in Attaching and Effacing Escherichia coli

(2012) V. A. Garcia-Angulo et al.   JOURNAL OF BACTERIOLOGY

Fis regulates the competitiveness of Pseudomonas putida on barley roots by inducing biofilm formation

(2012) J. Jakovleva et al.   MICROBIOLOGY-SGM

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

Effects on Growth by Changes of the Balance between GreA, GreB, and DksA Suggest Mutual Competition and Functional Redundancy in Escherichia coli

(2011) D. Vinella et al.   JOURNAL OF BACTERIOLOGY

Enteropathogenic and enterohaemorrhagic Escherichia coli: even more subversive elements

(2011) Alexander R. C. Wong et al.   MOLECULAR MICROBIOLOGY

In vitro transcription profiling of the σ S subunit of bacterial RNA polymerase: re-definition of the σ S regulon and identification of σ S -specific promoter sequence elements

(2011) Anna Maciąg et al.   NUCLEIC ACIDS RESEARCH

Structural Coupling between RNA Polymerase Composition and DNA Supercoiling in Coordinating Transcription: a Global Role for the Omega Subunit?

(2011) M. Geertz et al.   mBio

Enhanced Actin Pedestal Formation by Enterohemorrhagic Escherichia coli O157:H7 Adapted to the Mammalian Host

(2011) Michael John Brady et al.   Frontiers in Microbiology

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

(2010) Douglas F Browning et al.   CURRENT OPINION IN MICROBIOLOGY

Transcriptional Analysis of the grlRA Virulence Operon from Citrobacter rodentium

(2010) M. Tauschek et al.   JOURNAL OF BACTERIOLOGY

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Fis Is Essential for Capsule Production in Pasteurella multocida and Regulates Expression of Other Important Virulence Factors

(2010) Jason A. Steen et al.   PLoS Pathogens

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Citrobacter rodentium Genome Sequence Reveals Convergent Evolution with Human Pathogenic Escherichia coli

(2009) N. K. Petty et al.   JOURNAL OF BACTERIOLOGY

Virulence regulation inCitrobacter rodentium: the art of timing

(2009) Ji Yang et al.   Microbial Biotechnology

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

(2008) B.-K. Cho et al.   GENOME RESEARCH

RegA, an AraC-Like Protein, Is a Global Transcriptional Regulator That Controls Virulence Gene Expression in Citrobacter rodentium

(2008) E. Hart et al.   INFECTION AND IMMUNITY

Bicarbonate-mediated transcriptional activation of divergent operons by the virulence regulatory protein, RegA, from Citrobacter rodentium

(2008) Ji Yang et al.   MOLECULAR MICROBIOLOGY

Post-transcriptional processing of theLEE4operon in enterohaemorrhagicEscherichia coli

(2008) Patricia B. Lodato et al.   MOLECULAR MICROBIOLOGY