High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes
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Title
High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-07-16
DOI
10.1038/s41467-019-11049-4
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Note: Only part of the references are listed.- B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle
- (2018) Simone Rizzetto et al. BIOINFORMATICS
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- (2018) Heng Li BIOINFORMATICS
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- (2018) Yijing Zhao et al. Journal of Translational Medicine
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- (2018) Alexander B. Rosenberg et al. SCIENCE
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- (2018) Amit A. Upadhyay et al. Genome Medicine
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- (2018) Ishaan Gupta et al. NATURE BIOTECHNOLOGY
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- (2018) Mridusmita Saikia et al. NATURE METHODS
- Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
- (2018) Ryan R. Wick et al. PLoS Computational Biology
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- (2017) Robert Vaser et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- CD49a Expression Defines Tissue-Resident CD8 + T Cells Poised for Cytotoxic Function in Human Skin
- (2017) Stanley Cheuk et al. IMMUNITY
- Comparative Analysis of Single-Cell RNA Sequencing Methods
- (2017) Christoph Ziegenhain et al. MOLECULAR CELL
- Multiplexed quantification of proteins and transcripts in single cells
- (2017) Vanessa M Peterson et al. NATURE BIOTECHNOLOGY
- Simultaneous epitope and transcriptome measurement in single cells
- (2017) Marlon Stoeckius et al. NATURE METHODS
- Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput
- (2017) Todd M Gierahn et al. NATURE METHODS
- Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state
- (2017) Shaked Afik et al. NUCLEIC ACIDS RESEARCH
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- Single-cell transcriptomics to explore the immune system in health and disease
- (2017) Michael J. T. Stubbington et al. SCIENCE
- Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
- (2017) Ashley Byrne et al. Nature Communications
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding
- (2017) Payam Shahi et al. Scientific Reports
- Impact of sequencing depth and read length on single cell RNA sequencing data of T cells
- (2017) Simone Rizzetto et al. Scientific Reports
- Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells
- (2016) Auda A Eltahla et al. IMMUNOLOGY AND CELL BIOLOGY
- T cell fate and clonality inference from single-cell transcriptomes
- (2016) Michael J T Stubbington et al. NATURE METHODS
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
- (2015) Allon M. Klein et al. CELL
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- (2015) Evan Z. Macosko et al. CELL
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- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
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- (2015) Peter Savas et al. Nature Reviews Clinical Oncology
- Sources of PCR-induced distortions in high-throughput sequencing data sets
- (2015) Justus M. Kebschull et al. NUCLEIC ACIDS RESEARCH
- Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach
- (2015) Daniel J. Laydon et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Combinatorial labeling of single cells for gene expression cytometry
- (2015) H. C. Fan et al. SCIENCE
- IgH sequences in common variable immune deficiency reveal altered B cell development and selection
- (2015) Krishna M. Roskin et al. Science Translational Medicine
- PD-1 blockade induces responses by inhibiting adaptive immune resistance
- (2014) Paul C. Tumeh et al. NATURE
- Towards error-free profiling of immune repertoires
- (2014) Mikhail Shugay et al. NATURE METHODS
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
- IMGT®, the international ImMunoGeneTics information system® 25 years on
- (2014) Marie-Paule Lefranc et al. NUCLEIC ACIDS RESEARCH
- Improved Survival with T Cell Clonotype Stability After Anti-CTLA-4 Treatment in Cancer Patients
- (2014) E. Cha et al. Science Translational Medicine
- Characterizing immune repertoires by high throughput sequencing: strategies and applications
- (2014) Jorg J.A. Calis et al. TRENDS IN IMMUNOLOGY
- Antigen-loaded MR1 tetramers define T cell receptor heterogeneity in mucosal-associated invariant T cells
- (2013) Rangsima Reantragoon et al. JOURNAL OF EXPERIMENTAL MEDICINE
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- (2013) Ildiko Van Rhijn et al. NATURE IMMUNOLOGY
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- IgBLAST: an immunoglobulin variable domain sequence analysis tool
- (2013) Jian Ye et al. NUCLEIC ACIDS RESEARCH
- Using synthetic templates to design an unbiased multiplex PCR assay
- (2013) Christopher S. Carlson et al. Nature Communications
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- (2011) Rui-Ru Ji et al. CANCER IMMUNOLOGY IMMUNOTHERAPY
- The Sequence Alignment/Map format and SAMtools
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- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
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