An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Identification of a Mutation that Is Associated with the Saddle Tan and Black-and-Tan Phenotypes in Basset Hounds and Pembroke Welsh Corgis

(2013) Dayna L. Dreger et al.   JOURNAL OF HEREDITY

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs

(2012) Barbara C. Hoopes et al.   MAMMALIAN GENOME

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Two Loci on Chromosome 5 Are Associated with Serum IgE Levels in Labrador Retrievers

(2012) Marta Owczarek-Lipska et al.   PLoS One

Variation of BMP3 Contributes to Dog Breed Skull Diversity

(2012) Jeffrey J. Schoenebeck et al.   PLoS Genetics

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

(2011) E. Axelsson et al.   GENOME RESEARCH

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

A Frameshift Mutation in Golden Retriever Dogs with Progressive Retinal Atrophy Endorses SLC4A3 as a Candidate Gene for Human Retinal Degenerations

(2011) Louise M. Downs et al.   PLoS One

LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

(2011) Anne-Sophie Lequarré et al.   VETERINARY JOURNAL

LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs

(2011) Eija H. Seppälä et al.   PLoS Genetics

A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

(2011) Mia Olsson et al.   PLoS Genetics

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

Leading the way: canine models of genomics and disease

(2010) A. L. Shearin et al.   Disease Models & Mechanisms

Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves

(2010) P. Skoglund et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide association mapping identifies multiple loci for a canine SLE-related disease complex

(2010) Maria Wilbe et al.   NATURE GENETICS

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

Localization of Canine Brachycephaly Using an Across Breed Mapping Approach

(2010) Danika Bannasch et al.   PLoS One

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

(2010) M.-C. Tsai et al.   SCIENCE

Most “Dark Matter” Transcripts Are Associated With Known Genes

(2010) Harm van Bakel et al.   PLOS BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves

(2009) J.-F. Pang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

(2008) Xiangting Wang et al.   NATURE

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

(2008) Gerli Rosengren Pielberg et al.   NATURE GENETICS