A microbial factory for defensive kahalalides in a tripartite marine symbiosis

Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity

(2018) Weihong Qi et al.   Genome Biology and Evolution

Parallel lives of symbionts and hosts: chemical mutualism in marine animals

(2018) Maho Morita et al.   NATURAL PRODUCT REPORTS

Single-bacterial genomics validates rich and varied specialized metabolism of uncultivatedEntotheonellasponge symbionts

(2018) Tetsushi Mori et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes

(2018) Tory A. Hendry et al.   mBio

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Increased Biosynthetic Gene Dosage in a Genome-Reduced Defensive Bacterial Symbiont

(2017) Juan Lopera et al.   mSystems

Comparative genome analyses of novel Mangrovimonas -like strains isolated from estuarine mangrove sediments reveal xylan and arabinan utilization genes

(2016) Balachandra Dinesh et al.   Marine Genomics

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

Population pharmacokinetics of kahalalide F in advanced cancer patients

(2015) Bernardo Miguel-Lillo et al.   CANCER CHEMOTHERAPY AND PHARMACOLOGY

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Inferring Horizontal Gene Transfer

(2015) Matt Ravenhall et al.   PLoS Computational Biology

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

Characterization of the Bacterial Community of the Chemically Defended Hawaiian Sacoglossan Elysia rufescens

(2013) Jeanette Davis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing

(2013) Damir Baranašić et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Host specificity and coevolution of Flavobacteriaceae endosymbionts within the siphonous green seaweed Bryopsis

(2013) Joke Hollants et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Horizontal gene transfer and gene conversion drive evolution of modular polyketide synthases

(2012) Jurica Zucko et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

(2012) Paul G. Arnison et al.   NATURAL PRODUCT REPORTS

The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

(2012) Nadine Ziemert et al.   PLoS One

Towards a Better Detection of Horizontally Transferred Genes by Combining Unusual Properties Effectively

(2012) Dapeng Xiong et al.   PLoS One

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chemistry and Biology of Kahalalides

(2011) Jiangtao Gao et al.   CHEMICAL REVIEWS

Extreme genome reduction in symbiotic bacteria

(2011) John P. McCutcheon et al.   NATURE REVIEWS MICROBIOLOGY

Sea Slug Kleptoplasty and Plastid Maintenance in a Metazoan

(2011) K. N. Pelletreau et al.   PLANT PHYSIOLOGY

Variation in Tropical Reef Symbiont Metagenomes Defined by Secondary Metabolism

(2011) Mohamed S. Donia et al.   PLoS One

Who Is in There? Exploration of Endophytic Bacteria within the Siphonous Green Seaweed Bryopsis (Bryopsidales, Chlorophyta)

(2011) Joke Hollants et al.   PLoS One

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Barcodes for genomes and applications

(2008) Fengfeng Zhou et al.   BMC BIOINFORMATICS

Kahalalides V–Y Isolated from a Hawaiian Collection of the Sacoglossan MolluskElysia rufescens

(2008) Karumanchi V. Rao et al.   JOURNAL OF NATURAL PRODUCTS

Metabolites from symbiotic bacteria

(2008) Jörn Piel   NATURAL PRODUCT REPORTS