Oil degradation potential of microbial communities in water and sediment of Baltic Sea coastal area

Polycyclic aromatic hydrocarbons degradation by marine-derived basidiomycetes: optimization of the degradation process

(2018) Gabriela A.L. Vieira et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

(2018) Stephanie A. Eichorst et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of Oil-Degrading Microorganisms in the Gulf of Finland (Baltic Sea) in Spring and in Summer

(2018) T. Yu. Izmalkova et al.   MICROBIOLOGY

How, When, and Where Relic DNA Affects Microbial Diversity

(2018) J. T. Lennon et al.   mBio

Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination

(2018) Lijuan Yan et al.   Frontiers in Microbiology

Diversity and Niche of Archaea in Bioremediation

(2018) Mark James Krzmarzick et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

(2017) Panagiotis S Adam et al.   ISME Journal

Abundance and Co-Distribution of Widespread Marine Archaeal Lineages in Surface Sediments of Freshwater Water Bodies across the Iberian Peninsula

(2017) Sergi Compte-Port et al.   MICROBIAL ECOLOGY

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

(2017) Elias Broman et al.   Microbiome

Prospects for arbuscular mycorrhizal fungi (AMF) to assist in phytoremediation of soil hydrocarbon contaminants

(2016) Monika Rajtor et al.   CHEMOSPHERE

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

(2016) Mathilde Jeanbille et al.   Frontiers in Microbiology

Seagrass vegetation and meiofauna enhance the bacterial abundance in the Baltic Sea sediments (Puck Bay)

(2015) Emilia Jankowska et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Surveying the biodiversity of the Cryptomycota using a targeted PCR approach

(2015) Katherine L. Lazarus et al.   Fungal Ecology

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

(2015) Mireia Fillol et al.   ISME Journal

Origin, dynamics, and implications of extracellular DNA pools in marine sediments

(2015) Andrea Torti et al.   Marine Genomics

Occurrence of diverse alkane hydroxylase alkB genes in indigenous oil-degrading bacteria of Baltic Sea surface water

(2015) Signe Viggor et al.   MARINE POLLUTION BULLETIN

Molecular diversity and distribution of marine fungi across 130 European environmental samples

(2015) Thomas A. Richards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Novel lineage patterns from an automated water sampler to probe marine microbial biodiversity with ships of opportunity

(2015) Rowena F. Stern et al.   PROGRESS IN OCEANOGRAPHY

A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types

(2015) Mark A. Lever et al.   Frontiers in Microbiology

Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation

(2015) Bo Liang et al.   AMB Express

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

(2015) Rafael Bargiela et al.   Scientific Reports

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

(2014) P. J. McMurdie et al.   BIOINFORMATICS

Significance of archaeal nitrification in hypoxic waters of the Baltic Sea

(2014) Carlo Berg et al.   ISME Journal

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

(2014) Chris L. Dupont et al.   PLoS One

Diverse alkane hydroxylase genes in microorganisms and environments

(2014) Yong Nie et al.   Scientific Reports

Sedimentation of PCDD/Fs and PCBs in the Gulf of Finland and the Gulf of Bothnia, the Baltic Sea

(2013) Markku Korhonen et al.   CHEMOSPHERE

Iron–Manganese Concretions Sustaining Microbial Life in the Baltic Sea: The Structure of the Bacterial Community and Enrichments in Metal-Oxidizing Conditions

(2013) Pirjo Yli-Hemminki et al.   GEOMICROBIOLOGY JOURNAL

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Dominant petroleum hydrocarbon-degrading bacteria in the Archipelago Sea in South-West Finland (Baltic Sea) belong to different taxonomic groups than hydrocarbon degraders in the oceans

(2013) Anna Reunamo et al.   MARINE POLLUTION BULLETIN

Dynamic changes in the structure of microbial communities in Baltic Sea coastal seawater microcosms modified by crude oil, shale oil or diesel fuel

(2013) Signe Viggor et al.   MICROBIOLOGICAL RESEARCH

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Bacteria Contribute to Sediment Nutrient Release and Reflect Progressed Eutrophication-Driven Hypoxia in an Organic-Rich Continental Sea

(2013) Hanna Sinkko et al.   PLoS One

A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities

(2013) Petter Thureborn et al.   PLoS One

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Surprising spectra of root-associated fungi in submerged aquatic plants

(2012) Petr Kohout et al.   FEMS MICROBIOLOGY ECOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Characterization of the bacterial archaeal diversity in hydrocarbon-contaminated soil

(2012) De-Chao Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

Differences in bacterial community composition in Baltic Sea sediment in response to fish farming

(2011) Manu Tamminen et al.   AQUACULTURE

Comparison of sea surface microlayer and subsurface water bacterial communities in the Baltic Sea

(2011) A Lindroos et al.   AQUATIC MICROBIAL ECOLOGY

Degradation of petroleum hydrocarbons (C6–C40) and crude oil by a novel Dietzia strain

(2011) Xing-Biao Wang et al.   BIORESOURCE TECHNOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Abundance and Diversity of n-Alkane-Degrading Bacteria in a Forest Soil Co-Contaminated with Hydrocarbons and Metals: A Molecular Study on alkB Homologous Genes

(2011) Alfredo Pérez-de-Mora et al.   MICROBIAL ECOLOGY

Phosphorus Chemistry and Bacterial Community Composition Interact in Brackish Sediments Receiving Agricultural Discharges

(2011) Hanna Sinkko et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Spatially differing bacterial communities in water columns of the northern Baltic Sea

(2010) Kaisa Koskinen et al.   FEMS MICROBIOLOGY ECOLOGY

Marine-derived filamentous fungi and their potential application for polycyclic aromatic hydrocarbon bioremediation

(2010) Michel R.Z. Passarini et al.   MARINE POLLUTION BULLETIN

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Comparison of archaeal and bacterial community structures in heavily oil-contaminated and pristine soils

(2009) Ruyin Liu et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Removal of Benzo[a]pyrene by a fungus Aspergillus sp. BAP14

(2009) Yi-Rui Wu et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments

(2008) Anna Edlund et al.   FEMS MICROBIOLOGY ECOLOGY

Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples

(2008) Aurélie Cébron et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Burden or benefit? Virus–host interactions in the marine environment

(2008) Ruth-Anne Sandaa   RESEARCH IN MICROBIOLOGY