Selective ribosome profiling to study interactions of translating ribosomes in yeast
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Selective ribosome profiling to study interactions of translating ribosomes in yeast
Authors
Keywords
-
Journal
Nature Protocols
Volume 14, Issue 8, Pages 2279-2317
Publisher
Springer Science and Business Media LLC
Online
2019-07-23
DOI
10.1038/s41596-019-0185-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress
- (2019) Colin Chih-Chien Wu et al. MOLECULAR CELL
- Defining the physiological role of SRP in protein-targeting efficiency and specificity
- (2018) Elizabeth A. Costa et al. SCIENCE
- The extent of ribosome queuing in budding yeast
- (2018) Alon Diament et al. PLoS Computational Biology
- Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling
- (2018) Ayala Shiber et al. NATURE
- Trips-Viz: a transcriptome browser for exploring Ribo-Seq data
- (2018) Stephen J Kiniry et al. NUCLEIC ACIDS RESEARCH
- Ribosome–NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation
- (2018) Alexandra G. Knorr et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transcriptome-wide measurement of translation by ribosome profiling
- (2017) Nicholas J. McGlincy et al. METHODS
- Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome
- (2017) Lorenzo Calviello et al. TRENDS IN GENETICS
- Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
- (2016) Joshua G. Dunn et al. BMC GENOMICS
- Cotranslational signal-independent SRP preloading during membrane targeting
- (2016) Justin W. Chartron et al. NATURE
- Global profiling of SRP interaction with nascent polypeptides
- (2016) Daniela Schibich et al. NATURE
- Dynamics of ribosome scanning and recycling revealed by translation complex profiling
- (2016) Stuart K. Archer et al. NATURE
- Ribonuclease selection for ribosome profiling
- (2016) Maxim V. Gerashchenko et al. NUCLEIC ACIDS RESEARCH
- Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center
- (2016) James Marks et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data
- (2016) Audrey M. Michel et al. RNA Biology
- In vivo aspects of protein folding and quality control
- (2016) D. Balchin et al. SCIENCE
- Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
- (2016) Fuad Mohammad et al. Cell Reports
- Ribosome A and P sites revealed by length analysis of ribosome profiling data
- (2015) Andrew T. Martens et al. NUCLEIC ACIDS RESEARCH
- Operon structure and cotranslational subunit association direct protein assembly in bacteria
- (2015) Y.-W. Shieh et al. SCIENCE
- Translation inhibitors cause abnormalities in ribosome profiling experiments
- (2014) Maxim V. Gerashchenko et al. NUCLEIC ACIDS RESEARCH
- Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling
- (2014) C. C. Williams et al. SCIENCE
- Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
- (2014) C. H. Jan et al. SCIENCE
- The Cotranslational Function of Ribosome-Associated Hsp70 in Eukaryotic Protein Homeostasis
- (2013) Felix Willmund et al. CELL
- The Ribosome as a Hub for Protein Quality Control
- (2013) Sebastian Pechmann et al. MOLECULAR CELL
- Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes
- (2013) Annemarie H Becker et al. Nature Protocols
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- NAC functions as a modulator of SRP during the early steps of protein targeting to the endoplasmic reticulum
- (2012) Ying Zhang et al. MOLECULAR BIOLOGY OF THE CELL
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
- (2012) Nicholas T Ingolia et al. Nature Protocols
- Ribosome-associated chaperones as key players in proteostasis
- (2012) Steffen Preissler et al. TRENDS IN BIOCHEMICAL SCIENCES
- Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo
- (2011) Eugene Oh et al. CELL
- Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes
- (2011) Marta del Alamo et al. PLOS BIOLOGY
- Dual Binding Mode of the Nascent Polypeptide-associated Complex Reveals a Novel Universal Adapter Site on the Ribosome
- (2010) Markus Pech et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A dual function for chaperones SSB–RAC and the NAC nascent polypeptide–associated complex on ribosomes
- (2010) Ansgar Koplin et al. JOURNAL OF CELL BIOLOGY
- The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
- (2009) Günter Kramer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Molecular mechanism and structure of Trigger Factor bound to the translating ribosome
- (2008) Frieder Merz et al. EMBO JOURNAL
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More