De novo transcriptome of the newly described phototrophic dinoflagellate Yihiella yeosuensis: comparison between vegetative cells and cysts
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Title
De novo transcriptome of the newly described phototrophic dinoflagellate Yihiella yeosuensis: comparison between vegetative cells and cysts
Authors
Keywords
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Journal
MARINE BIOLOGY
Volume 166, Issue 8, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-07-09
DOI
10.1007/s00227-019-3554-9
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Note: Only part of the references are listed.- Interactions between the Newly Described Small- and Fast-Swimming Mixotrophic Dinoflagellate Yihiella yeosuensis and Common Heterotrophic Protists
- (2018) Hae Jin Jeong et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
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- (2017) Paul Julian Kersey et al. NUCLEIC ACIDS RESEARCH
- Conserved Transcriptional Responses to Nutrient Stress in Bloom-Forming Algae
- (2017) Matthew J. Harke et al. Frontiers in Microbiology
- Transcriptomic Analyses of Scrippsiella trochoidea Reveals Processes Regulating Encystment and Dormancy in the Life Cycle of a Dinoflagellate, with a Particular Attention to the Role of Abscisic Acid
- (2017) Yunyan Deng et al. Frontiers in Microbiology
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- (2015) Noan Le Bescot et al. ENVIRONMENTAL MICROBIOLOGY
- A hierarchy of conceptual models of red-tide generation: Nutrition, behavior, and biological interactions
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- Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array
- (2015) Gregory S. Mendez et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
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- (2014) Patrick J. Keeling et al. PLOS BIOLOGY
- Mixotrophy in the newly described dinoflagellate Ansanella granifera: feeding mechanism, prey species, and effect of prey concentration
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- (2009) Peter von Dassow et al. GENOME BIOLOGY
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- (2008) Christopher J. Gobler et al. HARMFUL ALGAE
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- (2008) Karin A.F. Zonneveld et al. MARINE MICROPALEONTOLOGY
- Control of Toxic Marine Dinoflagellate Blooms by Serial Parasitic Killers
- (2008) A. Chambouvet et al. SCIENCE
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