Methane production in the oxygenated water column of a perennially ice‐covered Antarctic lake

Influence of Environmental Drivers and Potential Interactions on the Distribution of Microbial Communities From Three Permanently Stratified Antarctic Lakes

(2019) Wei Li et al.   Frontiers in Microbiology

Strains of the toxic and bloom-forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane

(2018) Jonna E. Teikari et al.   ISME Journal

The physical limnology of a permanently ice-covered and chemically stratified Antarctic lake using high resolution spatial data from an autonomous underwater vehicle

(2018) Robert H. Spigel et al.   LIMNOLOGY AND OCEANOGRAPHY

Methylphosphonate metabolism by Pseudomonas sp. populations contributes to the methane oversaturation paradox in an oxic freshwater lake

(2017) Qian Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Niche specialization of bacteria in permanently ice-covered lakes of the McMurdo Dry Valleys, Antarctica

(2017) Miye Kwon et al.   ENVIRONMENTAL MICROBIOLOGY

The contribution of zooplankton to methane supersaturation in the oxygenated upper waters of the central Baltic Sea

(2017) Oliver Schmale et al.   LIMNOLOGY AND OCEANOGRAPHY

Minimal geological methane emissions during the Younger Dryas–Preboreal abrupt warming event

(2017) Vasilii V. Petrenko et al.   NATURE

Phosphorus redox reactions as pinch hitters in microbial metabolism

(2017) Oscar A. Sosa   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emerging role of wetland methane emissions in driving 21st century climate change

(2017) Zhen Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ambiguity in the causes for decadal trends in atmospheric methane and hydroxyl

(2017) Alexander J. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of atmospheric oxidation in recent methane growth

(2017) Matthew Rigby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis for methylphosphonate biosynthesis

(2017) David A. Born et al.   SCIENCE

Full-scale evaluation of methane production under oxic conditions in a mesotrophic lake

(2017) D. Donis et al.   Nature Communications

Microbial Community Dynamics in Two Polar Extremes: The Lakes of the McMurdo Dry Valleys and the West Antarctic Peninsula Marine Ecosystem

(2016) Jeff S. Bowman et al.   BIOSCIENCE

A flow cytometric method to measure prokaryotic records in ice cores: an example from the West Antarctic Ice Sheet Divide drilling site

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Methane ebullition and diffusion from northern ponds and lakes regulated by the interaction between temperature and system productivity

(2016) Tonya DelSontro et al.   LIMNOLOGY AND OCEANOGRAPHY

Marine methane paradox explained by bacterial degradation of dissolved organic matter

(2016) Daniel J. Repeta et al.   Nature Geoscience

Impact of nitrogen and phosphorus on phytoplankton production and bacterial community structure in two stratified Antarctic lakes: a bioassay approach

(2016) Amber G. Teufel et al.   POLAR BIOLOGY

Methane Production in Oxic Lake Waters Potentially Increases Aquatic Methane Flux to Air

(2016) Kam W. Tang et al.   Environmental Science & Technology Letters

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Photoadaptation to the polar night by phytoplankton in a permanently ice-covered Antarctic lake

(2015) R. M. Morgan-Kiss et al.   LIMNOLOGY AND OCEANOGRAPHY

Diversity and spatial distribution of autotrophic communities within and between ice-covered Antarctic lakes (McMurdo Dry Valleys)

(2015) Jenna M. Dolhi et al.   LIMNOLOGY AND OCEANOGRAPHY

Rock comminution as a source of hydrogen for subglacial ecosystems

(2015) J. Telling et al.   Nature Geoscience

Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley

(2015) J. A. Mikucki et al.   Nature Communications

Response of bacterioplankton to iron fertilization of the Southern Ocean, Antarctica

(2015) Sanjay K. Singh et al.   Frontiers in Microbiology

Aerobic production of methane from dissolved water-column methylphosphonate and sinking particles in the North Pacific Subtropical Gyre

(2014) DA del Valle et al.   AQUATIC MICROBIAL ECOLOGY

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

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An integrated study of photochemical function and expression of a key photochemical gene (psbA) in photosynthetic communities of Lake Bonney (McMurdo Dry Valleys, Antarctica)

(2014) Weidong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Abiotic methanogenesis from organosulphur compounds under ambient conditions

(2014) Frederik Althoff et al.   Nature Communications

Methane production by phosphate-starved SAR11 chemoheterotrophic marine bacteria

(2014) Paul Carini et al.   Nature Communications

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Diversity and abundance of phosphonate biosynthetic genes in nature

(2013) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species

(2013) Kim M. Handley et al.   Frontiers in Microbiology

Bacterial and Archaeal Diversity in Sediments of West Lake Bonney, McMurdo Dry Valleys, Antarctica

(2012) Chao Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and Expression of RubisCO Genes in a Perennially Ice-Covered Antarctic Lake during the Polar Night Transition

(2012) Weidong Kong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

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Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Stratification of Archaea in the Deep Sediments of a Freshwater Meromictic Lake: Vertical Shift from Methanogenic to Uncultured Archaeal Lineages

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Synthesis of Methylphosphonic Acid by Marine Microbes: A Source for Methane in the Aerobic Ocean

(2012) W. W. Metcalf et al.   SCIENCE

Ray Meta: scalable de novo metagenome assembly and profiling

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Global atmospheric methane: budget, changes and dangers

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Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway

(2011) B. Jochimsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial methane production in oxygenated water column of an oligotrophic lake

(2011) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Freshwater Methane Emissions Offset the Continental Carbon Sink

(2011) D. Bastviken et al.   SCIENCE

Marine Dissolved Organic Phosphorus Composition: Insights from Samples Recovered Using Combined Electrodialysis/Reverse Osmosis

(2010) Cindy L. Young et al.   AQUATIC GEOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Wave-induced release of methane: Littoral zones as source of methane in lakes

(2010) Hilmar Hofmann et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses

(2009) Asuncion Martinez et al.   ENVIRONMENTAL MICROBIOLOGY

Snow in the McMurdo Dry Valleys, Antarctica

(2009) Andrew G. Fountain et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Marinobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from the Arctic

(2008) D.-C. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Aerobic production of methane in the sea

(2008) David M. Karl et al.   Nature Geoscience