Local biotic interactions drive species-specific divergence in soil bacterial communities

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Soil pH and microbial diversity constrain the survival of E. coli in soil

(2018) Jiajia Xing et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pseudomonas protegens Pf-5 favours self-produced siderophore over free-loading in interspecies competition for iron

(2017) D. Joseph Sexton et al.   ENVIRONMENTAL MICROBIOLOGY

Cooperation in microbial communities and their biotechnological applications

(2017) Matteo Cavaliere et al.   ENVIRONMENTAL MICROBIOLOGY

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Antagonism correlates with metabolic similarity in diverse bacteria

(2017) Jakob Russel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Should Environmental Filtering be Abandoned?

(2017) Marc W. Cadotte et al.   TRENDS IN ECOLOGY & EVOLUTION

Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli

(2017) Carlos Molina-Santiago et al.   Environmental Microbiology Reports

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic organization of bacterial activity

(2016) Ember M Morrissey et al.   ISME Journal

A framework for priority effects

(2016) Tadashi Fukami et al.   JOURNAL OF VEGETATION SCIENCE

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Inhibitory interactions promote frequent bistability among competing bacteria

(2016) Erik S. Wright et al.   Nature Communications

Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes

(2015) Ximei Zhang et al.   GLOBAL CHANGE BIOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Community assembly, coexistence and the environmental filtering metaphor

(2014) Nathan J. B. Kraft et al.   FUNCTIONAL ECOLOGY

A role for biotic filtering in driving phylogenetic clustering in soil bacterial communities

(2014) Marta Goberna et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Assessing the relative importance of neutral stochasticity in ecological communities

(2014) Mark Vellend et al.   OIKOS

Historical contingency in species interactions: towards niche-based predictions

(2013) Rachel L. Vannette et al.   ECOLOGY LETTERS

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Influence of bacterial communities based on 454-pyrosequencing on the survival ofEscherichia coliO157:H7 in soils

(2013) Jincai Ma et al.   FEMS MICROBIOLOGY ECOLOGY

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Complex plant-soil interactions enhance plant species diversity by delaying community convergence

(2013) Tadashi Fukami et al.   JOURNAL OF ECOLOGY

Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species

(2012) Kevin R. Foster et al.   CURRENT BIOLOGY

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network

(2012) Rocío-Anaís Pérez-Gutiérrez et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Accumulation of rare earth elements by siderophore-forming Arthrobacter luteolus isolated from rare earth environment of Chavara, India

(2012) ES Challaraj Emmanuel et al.   JOURNAL OF BIOSCIENCES

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dispersal limitation and the assembly of soilActinobacteriacommunities in a long-term chronosequence

(2012) Sarah D. Eisenlord et al.   Ecology and Evolution

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Species phylogenetic relatedness, priority effects, and ecosystem functioning

(2011) Jiaqi Tan et al.   ECOLOGY

Community assembly: alternative stable states or alternative transient states?

(2011) Tadashi Fukami et al.   ECOLOGY LETTERS

Phylogenetic limiting similarity and competitive exclusion

(2011) Cyrille Violle et al.   ECOLOGY LETTERS

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic relatedness predicts priority effects in nectar yeast communities

(2011) K. G. Peay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Global patterns in the biogeography of bacterial taxa

(2010) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

Experimental tests of the bacterial distance–decay relationship

(2010) Thomas Bell   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of antibiotics and antibiotic resistance in nature

(2009) Rustam I. Aminov   ENVIRONMENTAL MICROBIOLOGY