Genomic signatures of seed mass adaptation to global precipitation gradients in sorghum

Novel Grain Weight Loci Revealed in a Cross between Cultivated and Wild Sorghum

(2018) Yongfu Tao et al.   Plant Genome

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population

(2017) Sophie Bouchet et al.   GENETICS

Precipitation drives global variation in natural selection

(2017) Adam M. Siepielski et al.   SCIENCE

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

(2017) Kelly Swarts et al.   SCIENCE

Mating Design and Genetic Structure of a Multi-Parent Advanced Generation Intercross (MAGIC) Population of Sorghum ( Sorghum bicolor (L.) Moench)

(2017) Patrick O. Ongom et al.   G3-Genes Genomes Genetics

Whole-Genome Analysis of Candidate genes Associated with Seed Size and Weight in Sorghum bicolor Reveals Signatures of Artificial Selection and Insights into Parallel Domestication in Cereal Crops

(2017) Yongfu Tao et al.   Frontiers in Plant Science

Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population

(2017) Sophie Bouchet et al.   GENETICS

Dissecting the Genetic Basis of Local Adaptation in Soybean

(2017) Nonoy B. Bandillo et al.   Scientific Reports

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Identifying outlier loci in admixed and in continuous populations using ancestral population differentiation statistics

(2016) Helena Martins et al.   MOLECULAR ECOLOGY

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm

(2016) Richard E. Boyles et al.   Plant Genome

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

From association to prediction: statistical methods for the dissection and selection of complex traits in plants

(2015) Alexander E Lipka et al.   CURRENT OPINION IN PLANT BIOLOGY

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport

(2015) Davide Sosso et al.   NATURE GENETICS

TaGS5-3A,a grain size gene selected during wheat improvement for larger kernel and yield

(2015) Lin Ma et al.   PLANT BIOTECHNOLOGY JOURNAL

Fine mapping of qGW1, a major QTL for grain weight in sorghum

(2015) Lijie Han et al.   THEORETICAL AND APPLIED GENETICS

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Landscape genomics reveal signatures of local adaptation in barley (Hordeum vulgare L.)

(2015) Tiegist D. Abebe et al.   Frontiers in Plant Science

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Characterization of a Multiseeded () Mutant of Sorghum for Increasing Grain Yield

(2014) Gloria Burow et al.   CROP SCIENCE

Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree speciesAlnus glutinosa

(2014) Hanne De Kort et al.   MOLECULAR ECOLOGY

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

A practical guide to measuring local adaptation

(2013) François Blanquart et al.   ECOLOGY LETTERS

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

SSR markers linked to kernel weight and tiller number in sorghum identified by association mapping

(2012) Hari D. Upadhyaya et al.   EUPHYTICA

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Overexpression of a basic helix–loop–helix gene Antagonist of PGL1 (APG) decreases grain length of rice

(2012) Dany Heang et al.   Plant Biotechnology

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Seed mass and summer drought survival in a Mediterranean-climate ecosystem

(2011) Lauren M. Hallett et al.   PLANT ECOLOGY

H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice

(2011) Pengfei Sui et al.   PLANT JOURNAL

Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid

(2011) J.-H. Chen et al.   PLANT PHYSIOLOGY

Selection for Earlier Flowering Crop Associated with Climatic Variations in the Sahel

(2011) Yves Vigouroux et al.   PLoS One

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Constructing genomic maps of positive selection in humans: Where do we go from here?

(2009) J. M. Akey   GENOME RESEARCH

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design

(2009) S. Myles et al.   PLANT CELL

Bet-hedging as an evolutionary game: the trade-off between egg size and number

(2009) H. Olofsson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Brassinosteroids Regulate Grain Filling in Rice

(2008) C.-y. Wu et al.   PLANT CELL