Uncovering anthocyanin biosynthesis related microRNAs and their target genes by small RNA and degradome sequencing in tuberous roots of sweetpotato

Transcriptomic Analysis of Red-Fleshed Apples Reveals the Novel Role of MdWRKY11 in Flavonoid and Anthocyanin Biosynthesis

(2018) Nan Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Auxin regulates anthocyanin biosynthesis through the Aux/IAA–ARF signaling pathway in apple

(2018) Yi-cheng Wang et al.   Horticulture Research

CaMYC, A Novel Transcription Factor, Regulates Anthocyanin Biosynthesis in Color-leaved Pepper (Capsicum annuum L.)

(2018) Bo-Ya Lu et al.   JOURNAL OF PLANT GROWTH REGULATION

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

(2018) Shan Wu et al.   Nature Communications

The small ubiquitin-like modifier E3 ligase MdSIZ1 promotes anthocyanin accumulation by sumoylating MdMYB1 under low-temperature conditions in apple

(2017) Li-Jie Zhou et al.   PLANT CELL AND ENVIRONMENT

High throughput deep sequencing reveals the important roles of microRNAs during sweetpotato storage at chilling temperature

(2017) Zeyi Xie et al.   Scientific Reports

The miRNAome of Catharanthus roseus: identification, expression analysis and potential roles of microRNAs in regulation of terpenoid indole alkaloid biosynthesis

(2017) Ethan M. Shen et al.   Scientific Reports

High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis)

(2016) Yan-Ni Fang et al.   BMC GENOMICS

Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

(2016) Jingli Chen et al.   BMC PLANT BIOLOGY

Identification of anthocyanin biosynthesis related microRNAs in a distinctive Chinese radish (Raphanus sativus L.) by high-throughput sequencing

(2016) Yuyan Sun et al.   MOLECULAR GENETICS AND GENOMICS

Repression of MYBL2 by Both microRNA858a and HY5 Leads to the Activation of Anthocyanin Biosynthetic Pathway in Arabidopsis

(2016) Yulong Wang et al.   Molecular Plant

Identification of miRNAs in sweet potato by Solexa sequencing

(2016) X. Bian et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don

(2015) H. Hirakawa et al.   DNA RESEARCH

Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods

(2015) Yee-Shan Ku et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors

(2015) Hui Zhou et al.   PLANT JOURNAL

Role of microRNAs During Flower and Storage Root Development in Sweet Potato

(2015) Runrun Sun et al.   PLANT MOLECULAR BIOLOGY REPORTER

Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic

(2015) Xiaoyun Jia et al.   PLANT SCIENCE

Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato

(2015) Xiaoyun Jia et al.   PLANTA

Small RNA and Degradome Sequencing Reveal Complex Roles of miRNAs and Their Targets in Developing Wheat Grains

(2015) Tian Li et al.   PLoS One

Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

(2015) Wenjia Xu et al.   TRENDS IN PLANT SCIENCE

Isolation of a WD40-repeat gene regulating anthocyanin biosynthesis in storage roots of purple-fleshed sweet potato

(2014) Wei Dong et al.   ACTA PHYSIOLOGIAE PLANTARUM

Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing

(2014) Hongjun Liu et al.   BMC GENOMICS

A Role for PacMYBA in ABA-Regulated Anthocyanin Biosynthesis in Red-Colored Sweet Cherry cv. Hong Deng (Prunus avium L.)

(2014) Xinjie Shen et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis WRKY57 Functions as a Node of Convergence for Jasmonic Acid- and Auxin-Mediated Signaling in Jasmonic Acid-Induced Leaf Senescence

(2014) Y. Jiang et al.   PLANT CELL

LcMYB1 Is a Key Determinant of Differential Anthocyanin Accumulation among Genotypes, Tissues, Developmental Phases and ABA and Light Stimuli in Litchi chinensis

(2014) Biao Lai et al.   PLoS One

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Overexpression of microRNA828 reduces anthocyanin accumulation in Arabidopsis

(2013) Fengxi Yang et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis

(2013) Alexander Maier et al.   PLANT JOURNAL

Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins

(2013) Zhong Liu et al.   PLANTA

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MicroR828 regulates lignin and H2 O2 accumulation in sweet potato on wounding

(2012) Jeng-Shane Lin et al.   NEW PHYTOLOGIST

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

The bHLH transcription factor MdbHLH3 promotes anthocyanin accumulation and fruit colouration in response to low temperature in apples

(2012) XING-BIN XIE et al.   PLANT CELL AND ENVIRONMENT

Characterization of microRNAs Expressed during Secondary Wall Biosynthesis in Acacia mangium

(2012) Seong Siang Ong et al.   PLoS One

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Characterization of statistical features for plant microRNA prediction

(2011) Vivek Thakur et al.   BMC GENOMICS

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

cis- andtrans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in TwoArabidopsisSpecies and Their Allopolyploids

(2011) Danny W-K. Ng et al.   PLANT CELL

The Jasmonate-ZIM-Domain Proteins Interact with the WD-Repeat/bHLH/MYB Complexes to Regulate Jasmonate-Mediated Anthocyanin Accumulation and Trichome Initiation inArabidopsis thaliana

(2011) Tiancong Qi et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates

(2011) Alexandre Robert-Seilaniantz et al.   PLANT JOURNAL

An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis

(2011) Qing-Jun Luo et al.   PLANT MOLECULAR BIOLOGY

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Differential Expression of Anthocyanin Biosynthetic Genes in Relation to Anthocyanin Accumulation in the Pericarp of Litchi Chinensis Sonn

(2011) Yong-Zan Wei et al.   PLoS One

The ethylene signaling pathway has a negative impact on sucrose-induced anthocyanin accumulation in Arabidopsis

(2010) Yerim Kwon et al.   JOURNAL OF PLANT RESEARCH

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Sweet potato leaves: properties and synergistic interactions that promote health and prevent disease

(2010) Melissa Johnson et al.   NUTRITION REVIEWS

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis thaliana

(2009) Daryl D. Rowan et al.   NEW PHYTOLOGIST

Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

(2009) C. Lelandais-Briere et al.   PLANT CELL

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Arabidopsis thaliana MYB75/PAP1transcription factor induces anthocyanin production in transgenic tomato plants

(2008) Diana Lucia Zuluaga et al.   FUNCTIONAL PLANT BIOLOGY

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport

(2008) Maria-Cruz Cutanda-Perez et al.   PLANT MOLECULAR BIOLOGY