Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing

(2014) Hongjun Liu et al.   BMC GENOMICS

Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato

(2014) Ning Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bioactive Compounds, Antioxidant and Binding Activities and Spear Yield of Asparagus officinalis L.

(2014) Jong Won Lee et al.   PLANT FOODS FOR HUMAN NUTRITION

MiR393 Regulation of Auxin Signaling and Redox-Related Components during Acclimation to Salinity in Arabidopsis

(2014) María José Iglesias et al.   PLoS One

Arabidopsis miR171-Targeted Scarecrow-Like Proteins Bind to GT cis-Elements and Mediate Gibberellin-Regulated Chlorophyll Biosynthesis under Light Conditions

(2014) Zhaoxue Ma et al.   PLoS Genetics

High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

(2013) Anna Lukasik et al.   BMC GENOMICS

Genome-wide identification and characterization of cadmium-responsive microRNAs and their target genes in radish (Raphanus sativus L.) roots

(2013) Liang Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of target mRNAs for grapevine microRNAs with an integrated strategy of modified RLM-RACE, newly developed PPM-RACE and qPCRs

(2013) Chen Wang et al.   JOURNAL OF PLANT PHYSIOLOGY

The involvement of InMIR167 in the regulation of expression of its target gene InARF8, and their participation in the vegetative and generative development of Ipomoea nil plants

(2013) Paulina Glazińska et al.   JOURNAL OF PLANT PHYSIOLOGY

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.)

(2013) Francesco Mercati et al.   PLANT SCIENCE

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni

(2013) Antonio Marco et al.   PLoS Neglected Tropical Diseases

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing

(2012) Pablo Pelaez et al.   BMC GENOMICS

APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19

(2012) N. T. Krogan et al.   DEVELOPMENT

Regulation of Flowering Time by MicroRNAs

(2012) Chuan-Miao Zhou et al.   Journal of Genetics and Genomics

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing discovery of novel and conserved microRNAs in strawberry (Fragaria×ananassa)

(2012) Anjing Ge et al.   PHYSIOLOGIA PLANTARUM

Identification ofTaxusmicroRNAs and their targets with high-throughput sequencing and degradome analysis

(2012) Da-Cheng Hao et al.   PHYSIOLOGIA PLANTARUM

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

(2012) Joshua R. Puzey et al.   PLoS One

A Combined Approach of High-Throughput Sequencing and Degradome Analysis Reveals Tissue Specific Expression of MicroRNAs and Their Targets in Cucumber

(2012) Weihua Mao et al.   PLoS One

High-Throughput Sequencing and Characterization of the Small RNA Transcriptome Reveal Features of Novel and Conserved MicroRNAs in Panax ginseng

(2012) Bin Wu et al.   PLoS One

Sex differences in microRNA regulation of gene expression: no smoke, just miRs

(2012) Christopher P Morgan et al.   Biology of Sex Differences

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Expression levels of microRNAs are not associated with their regulatory activities

(2011) Zhi Liang et al.   Biology Direct

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis

(2011) Zhe-Hao Chen et al.   PLANT MOLECULAR BIOLOGY

miR172 signals are incorporated into the miR156 signaling pathway at the SPL3/4/5 genes in Arabidopsis developmental transitions

(2011) Jae-Hoon Jung et al.   PLANT MOLECULAR BIOLOGY

Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing

(2011) Lei Chen et al.   PLANTA

SCARECROW-LIKE 3 promotes gibberellin signaling by antagonizing master growth repressor DELLA in Arabidopsis

(2011) Zhong-Lin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gibberellin control of stamen development: a fertile field

(2011) Andrew R.G. Plackett et al.   TRENDS IN PLANT SCIENCE

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis lyrataSmall RNAs: TransientMIRNAand Small Interfering RNA Loci within theArabidopsisGenus

(2010) Zhaorong Ma et al.   PLANT CELL

Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2

(2010) L. Yant et al.   PLANT CELL

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum)

(2010) Fuliang Xie et al.   PLANTA

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

MicroRNA maturation and action—the expanding roles of ARGONAUTEs

(2008) Allison C Mallory et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant sex chromosomes: molecular structure and function

(2008) M. Jamilena et al.   CYTOGENETIC AND GENOME RESEARCH

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Large-scale analysis of the GRAS gene family in Arabidopsis thaliana

(2008) Mi-Hyun Lee et al.   PLANT MOLECULAR BIOLOGY

Identification of soybean microRNAs and their targets

(2008) Baohong Zhang et al.   PLANTA

MicroRNA, sex determination and floral meristem determinacy in maize

(2008) Jo Banks   GENOME BIOLOGY