Influence of a climatic gradient on genetic exchange between two oak species

New prospects in the detection and comparative analysis of hybridization in the tree of life

(2018) Ryan A. Folk et al.   AMERICAN JOURNAL OF BOTANY

Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species

(2018) Susan Rutherford et al.   HEREDITY

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Adaptive introgression and maintenance of a trispecies hybrid complex in range-edge populations of Populus

(2018) Vikram E. Chhatre et al.   MOLECULAR ECOLOGY

RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercus sect. Quercus : Fagaceae)

(2018) Bernard Y. Kim et al.   MOLECULAR ECOLOGY

Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in western North America

(2017) John D. McVay et al.   GENOME

Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus)

(2017) Sorel Fitz-Gibbon et al.   GENOME

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Genomic data reveal cryptic lineage diversification and introgression in Californian golden cup oaks (section Protobalanus )

(2017) Joaquín Ortego et al.   NEW PHYTOLOGIST

Extensive recent secondary contacts between four European white oak species

(2017) Thibault Leroy et al.   NEW PHYTOLOGIST

A genetic legacy of introgression confounds phylogeny and biogeography in oaks

(2017) John D. McVay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Association of genetic and phenotypic variability with geography and climate in three southern California oaks

(2016) E. C. Riordan et al.   AMERICAN JOURNAL OF BOTANY

Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.)

(2016) Christian Rellstab et al.   ANNALS OF FOREST SCIENCE

Hybridization and divergence in multi-species oak (Quercus) communities

(2016) Alexis R. Sullivan et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Genomic and functional approaches reveal a case of adaptive introgression fromPopulus balsamifera(balsam poplar) inP. trichocarpa(black cottonwood)

(2016) Adriana Suarez-Gonzalez et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Hybridization and endangered species protection in the molecular era

(2016) Robert K. Wayne et al.   MOLECULAR ECOLOGY

Impacts of human-induced environmental disturbances on hybridization between two ecologically differentiated Californian oak species

(2016) Joaquín Ortego et al.   NEW PHYTOLOGIST

Hybridization in Plants: Old Ideas, New Techniques

(2016) Benjamin E. Goulet et al.   PLANT PHYSIOLOGY

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Nee (Fagaceae)

(2016) V. L. Sork et al.   G3-Genes Genomes Genetics

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

Historical introgression among the American live oaks and the comparative nature of tests for introgression

(2015) Deren A. R. Eaton et al.   EVOLUTION

Genetic architecture and genomic patterns of gene flow between hybridizing species of Picea

(2015) A De La Torre et al.   HEREDITY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

WEAK CROSSABILITY BARRIER BUT STRONG JUVENILE SELECTION SUPPORTS ECOLOGICAL SPECIATION OF THE HYBRID PINEPINUS DENSATAON THE TIBETAN PLATEAU

(2014) Wei Zhao et al.   EVOLUTION

Influence of climatic niche suitability and geographical overlap on hybridization patterns among southern Californian oaks

(2014) Joaquín Ortego et al.   JOURNAL OF BIOGEOGRAPHY

Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan

(2014) Vincent Bourret et al.   MOLECULAR ECOLOGY

Genome-wide admixture and ecological niche modelling reveal the maintenance of species boundaries despite long history of interspecific gene flow

(2014) Amanda R. De La Torre et al.   MOLECULAR ECOLOGY

Strong extrinsic reproductive isolation between parapatric populations of an Australian groundsel

(2014) Maria C. Melo et al.   NEW PHYTOLOGIST

Altitudinal gradients, plant hybrid zones and evolutionary novelty

(2014) R. J. Abbott et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Hybridization of Quercus castanea (Fagaceae) across a red oak species gradient in Mexico

(2014) Leticia Valencia-Cuevas et al.   PLANT SYSTEMATICS AND EVOLUTION

A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

(2014) Andrew L. Hipp et al.   PLoS One

Maximum likelihood inference of reticulate evolutionary histories

(2014) Yun Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Speciation and Introgression between Mimulus nasutus and Mimulus guttatus

(2014) Yaniv Brandvain et al.   PLoS Genetics

Limited hybridization across an edaphic disjunction between the gabbro-endemic shrub Ceanothus roderickii (Rhamnaceae) and the soil-generalist Ceanothus cuneatus

(2013) Dylan O. Burge et al.   AMERICAN JOURNAL OF BOTANY

Imprints of Natural Selection Along Environmental Gradients in Phenology-Related Genes of Quercus petraea

(2013) F. J. Alberto et al.   GENETICS

Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing

(2013) J. D. Lozier   MOLECULAR ECOLOGY

Adaptation and exogenous selection in aPicea glauca×Picea engelmanniihybrid zone: implications for forest management under climate change

(2013) Amanda R. De La Torre et al.   NEW PHYTOLOGIST

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Fine-scale environmental control of hybridization in oaks

(2012) Lélia Lagache et al.   MOLECULAR ECOLOGY

Leaf morphological and genetic differentiation between Quercus rubra L. and Q. ellipsoidalis E.J. Hill populations in contrasting environments

(2012) Oliver Gailing et al.   PLANT SYSTEMATICS AND EVOLUTION

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Molecular, morphological, and ecological niche differentiation of sympatric sister oak species, Quercus virginiana and Q. geminata (Fagaceae)

(2009) Jeannine Cavender-Bares et al.   AMERICAN JOURNAL OF BOTANY

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex)

(2009) C Burgarella et al.   HEREDITY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Introduction. Speciation in plants and animals: pattern and process

(2008) R. J Abbott et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The strength and genetic basis of reproductive isolating barriers in flowering plants

(2008) D. B Lowry et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES