Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

Mitochondrial gene order evolution in Mollusca: Inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae)

(2018) Davide Guerra et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The first complete mitochondrial genome of Limnadia lenticularis (Branchiopoda, Spinicaudata), with new insights on its phylogeography and on the taxonomy of the genus

(2018) Laure Bellec et al.   HYDROBIOLOGIA

Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics

(2018) Martin Schwentner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Draft genomes and genomic divergence of two Lepidurus tadpole shrimp species (Crustacea, Branchiopoda, Notostraca)

(2018) Castrense Savojardo et al.   Molecular Ecology Resources

Diversification of mitochondrial genome of Daphnia galeata (Cladocera, Crustacea): Comparison with phylogenetic consideration of the complete sequences of clones isolated from five lakes in Japan

(2017) Shin-ichi Tokishita et al.   GENE

The mitochondrial genome of Diaphanosoma dubium with comparison with Daphnia magna

(2017) Ping Liu et al.   Mitochondrial DNA Part B-Resources

The highly rearranged mitochondrial genomes of the crabs Maja crispata and Maja squinado (Majidae) and gene order evolution in Brachyura

(2017) Andrea Basso et al.   Scientific Reports

Novel insights into mitochondrial gene rearrangement in thrips (Insecta: Thysanoptera) from the grass thrips, Anaphothrips obscurus

(2017) Hangrui Liu et al.   Scientific Reports

Fossil calibrations for the arthropod Tree of Life

(2016) Joanna M. Wolfe et al.   EARTH-SCIENCE REVIEWS

Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages

(2016) Dennis V. Lavrov et al.   Genome Biology and Evolution

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete mitochondrial genome of the Chinese Daphnia pulex (Cladocera, Daphniidae)

(2016) Haijun Zhang et al.   ZooKeys

The complete mitochondrial genome of the subterranean termite Reticulitermes flaviceps (Isoptera: Rhinotermitidae)

(2016) Sha Zhao et al.   Conservation Genetics Resources

Mitochondrial genomes of praying mantises (Dictyoptera, Mantodea): rearrangement, duplication, and reassignment of tRNA genes

(2016) Fei Ye et al.   Scientific Reports

Dating the origin of the major lineages of Branchiopoda

(2016) Xiao-Yan Sun et al.   Palaeoworld

The complete mitochondrial DNA genome of Chinese Daphnia carinata (Clasocera: Daphniidae)

(2016) Xuexia Geng et al.   Mitochondrial DNA Part B-Resources

Rearrangement of mitochondrial tRNA genes in flat bugs (Hemiptera: Aradidae)

(2016) Fan Song et al.   Scientific Reports

Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution

(2015) Tomotaka Matsumoto et al.   GENETICS

The complete mitogenome of the freshwater fairy shrimpStreptocephalus sirindhornae(Crustacea: Anostraca: Streptocephalidae)

(2015) Xue-Chen Liu et al.   Mitochondrial DNA

The complete mitogenome of the fairy shrimpPhallocryptus tserensodnomi(Crustacea: Anostraca: Thamnocephalidae)

(2015) Yu-Peng Fan et al.   Mitochondrial DNA

Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution

(2015) Tomotaka Matsumoto et al.   GENETICS

Mitochondrial genome rearrangements at low taxonomic levels: three distinct mitogenome gene orders in the genusPseudoniphargus(Crustacea: Amphipoda)

(2015) Morten Stokkan et al.   Mitochondrial DNA Part A

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria

(2014) Robert Ekblom et al.   BMC GENOMICS

Evolutionary relationships within Triops (Branchiopoda: Notostraca) using complete mitochondrial genomes

(2014) Rebekah L. Horn et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors

(2014) Yoh-ichi Watanabe et al.   Frontiers in Genetics

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the Notostraca

(2013) Michael Korn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial genome sequences of Artemia tibetiana and Artemia urmiana: assessing molecular changes for high plateau adaptation

(2013) HangXiao Zhang et al.   Science China-Life Sciences

Multiple global radiations in tadpole shrimps challenge the concept of ‘living fossils’

(2013) Thomas C. Mathers et al.   PeerJ

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements

(2011) Frank Jühling et al.   NUCLEIC ACIDS RESEARCH

Complete mitochondrial genome of the longtail tadpole shrimpTriops longicaudatus(Crustacea, Branchiopoda, Notostraca)

(2010) Ju-Sun Ryu et al.   Mitochondrial DNA

A Generation Time Effect on the Rate of Molecular Evolution in Invertebrates

(2010) Jessica A. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Correlates of substitution rate variation in mammalian protein-coding sequences

(2009) John J Welch et al.   BMC EVOLUTIONARY BIOLOGY

Molecular taxonomy and phylogeny of ItalianLepidurustaxa (Branchiopoda: Notostraca)

(2009) B. Mantovani et al.   ITALIAN JOURNAL OF ZOOLOGY

Mitochondrial and nuclear DNA variability in the living fossil Triops cancriformis (Bosc, 1801) (Crustacea, Branchiopoda, Notostraca)

(2008) B Mantovani et al.   HEREDITY

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY