Accurate Phylogenetic Relationships Among Mycobacterium bovis Strains Circulating in France Based on Whole Genome Sequencing and Single Nucleotide Polymorphism Analysis

Unexpected genomic and phenotypic diversity of Mycobacterium africanum Lineage 5 affects drug resistance, protein secretion and immunogenicity

(2018) Louis S Ates et al.   Genome Biology and Evolution

Mycobacterium tuberculosisComplex Exhibits Lineage-Specific Variations Affecting Protein Ductility and Epitope Recognition

(2017) Inmaculada Yruela et al.   Genome Biology and Evolution

One bacillus to rule them all? – Investigating broad range host adaptation in Mycobacterium bovis

(2017) Adrian R. Allen   INFECTION GENETICS AND EVOLUTION

The role of hydrophobicity in tuberculosis evolution and pathogenicity

(2017) Monika Jankute et al.   Scientific Reports

MIRU-VNTR allelic variability depends on Mycobacterium bovis clonal group identity

(2016) Amandine Hauer et al.   INFECTION GENETICS AND EVOLUTION

Phylogeny to function: PE/PPE protein evolution and impact onMycobacterium tuberculosispathogenicity

(2015) S. Fishbein et al.   MOLECULAR MICROBIOLOGY

Genetic Evolution of Mycobacterium bovis Causing Tuberculosis in Livestock and Wildlife in France since 1978

(2015) Amandine Hauer et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Overview and phylogeny of Mycobacterium tuberculosis complex organisms: Implications for diagnostics and legislation of bovine tuberculosis

(2014) Sabrina Rodriguez-Campos et al.   RESEARCH IN VETERINARY SCIENCE

The phylogeny and population structure of Mycobacterium bovis in the British Isles

(2013) A.R. Allen et al.   INFECTION GENETICS AND EVOLUTION

Splitting of a Prevalent Mycobacterium bovis Spoligotype by Variable-Number Tandem-Repeat Typing Reveals High Heterogeneity in an Evolving Clonal Group

(2013) Sabrina Rodriguez-Campos et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Virulence factors of theMycobacterium tuberculosiscomplex

(2013) Marina A. Forrellad et al.   Virulence

Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study

(2013) Andreas Roetzer et al.   PLOS MEDICINE

Mycoketide: A CD1c-Presented Antigen with Important Implications in Mycobacterial Infection

(2012) Isamu Matsunaga et al.   Clinical & Developmental Immunology

Single Nucleotide Polymorphisms in the Mycobacterium bovis Genome Resolve Phylogenetic Relationships

(2012) D. Joshi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High Resolution Discrimination of Clinical Mycobacterium tuberculosis Complex Strains Based on Single Nucleotide Polymorphisms

(2012) Susanne Homolka et al.   PLoS One

Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade

(2012) Yann Blouin et al.   PLoS One

Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations

(2012) Roman Biek et al.   PLoS Pathogens

PE_PGRS30 is required for the full virulence of Mycobacterium tuberculosis

(2011) Raffaella Iantomasi et al.   CELLULAR MICROBIOLOGY

The global distribution and phylogeography of Mycobacterium bovis clonal complexes

(2011) Noel H. Smith   INFECTION GENETICS AND EVOLUTION

European 2 – A clonal complex of Mycobacterium bovis dominant in the Iberian Peninsula

(2011) Sabrina Rodriguez-Campos et al.   INFECTION GENETICS AND EVOLUTION

Limitations of Spoligotyping and Variable-Number Tandem-Repeat Typing for Molecular Tracing of Mycobacterium bovis in a High-Diversity Setting

(2011) Sabrina Rodriguez-Campos et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

(2011) Jennifer L. Gardy et al.   NEW ENGLAND JOURNAL OF MEDICINE

A Comprehensive Survey of Single Nucleotide Polymorphisms (SNPs) across Mycobacterium bovis Strains and M. bovis BCG Vaccine Strains Refines the Genealogy and Defines a Minimal Set of SNPs That Separate Virulent M. bovis Strains and M. bovis BCG Strains

(2009) M. C. Garcia Pelayo et al.   INFECTION AND IMMUNITY

African 1, an Epidemiologically Important Clonal Complex of Mycobacterium bovis Dominant in Mali, Nigeria, Cameroon, and Chad

(2009) B. Muller et al.   JOURNAL OF BACTERIOLOGY

Molecular Typing of Mycobacterium bovis Strains Isolated in Italy from 2000 to 2006 and Evaluation of Variable-Number Tandem Repeats for Geographically Optimized Genotyping

(2009) M. B. Boniotti et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay

(2009) J. Zhang et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis

(2009) Noel H. Smith et al.   NATURE REVIEWS MICROBIOLOGY

High spoligotype diversity within a Mycobacterium bovis population: Clues to understanding the demography of the pathogen in Europe

(2009) Sabrina Rodríguez et al.   VETERINARY MICROBIOLOGY

Mapping of IS6110 insertion sites in Mycobacterium bovis isolates in relation to adaptation from the animal to human host

(2008) Otal Isabel et al.   VETERINARY MICROBIOLOGY