Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade

SITVITWEB – A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

(2012) Christophe Demay et al.   INFECTION GENETICS AND EVOLUTION

TB-Lineage: An online tool for classification and analysis of strains of Mycobacterium tuberculosis complex

(2012) Amina Shabbeer et al.   INFECTION GENETICS AND EVOLUTION

Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region

(2012) Brian Weiner et al.   PLoS One

Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

(2012) C. M. Schlebusch et al.   SCIENCE

Mycobacterium tuberculosis – Heterogeneity revealed through whole genome sequencing

(2012) Chris Ford et al.   TUBERCULOSIS

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex

(2012) Stephen D. Bentley et al.   PLoS Neglected Tropical Diseases

Tuberculosis in Sudan: a study of Mycobacterium tuberculosis strain genotype and susceptibility to anti-tuberculosis drugs

(2011) Ghada S Sharaf Eldin et al.   BMC INFECTIOUS DISEASES

Comparative Genomics ofesxGenes from Clinical Isolates of Mycobacterium tuberculosis Provides Evidence for Gene Conversion and Epitope Variation

(2011) Swapna Uplekar et al.   INFECTION AND IMMUNITY

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

(2011) Christopher B Ford et al.   NATURE GENETICS

Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

(2011) Jennifer L. Gardy et al.   NEW ENGLAND JOURNAL OF MEDICINE

Investigation on Mycobacterium tuberculosis Diversity in China and the Origin of the Beijing Clade

(2011) Kanglin Wan et al.   PLoS One

Modern and Ancestral Genotypes of Mycobacterium tuberculosis from Andhra Pradesh, India

(2011) Shirly K. Thomas et al.   PLoS One

The rise and fall of the Mycobacterium tuberculosis genome

(2011) Frédéric J. Veyrier et al.   TRENDS IN MICROBIOLOGY

Diversity of Mycobacterium tuberculosis genotypes circulating in Ndola, Zambia

(2010) Chanda Mulenga et al.   BMC INFECTIOUS DISEASES

Molecular diversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mozambique

(2010) Sofia O Viegas et al.   BMC MICROBIOLOGY

Molecular characteristics of “Mycobacterium canettii” the smooth Mycobacterium tuberculosis bacilli

(2010) Michel Fabre et al.   INFECTION GENETICS AND EVOLUTION

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

(2010) Iñaki Comas et al.   NATURE GENETICS

Deficiencies and challenges in the study of ancient tuberculosis DNA

(2009) Alicia K. Wilbur et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Unexpectedly High Proportion of Ancestral Manu Genotype Mycobacterium tuberculosis Strains Cultured from Tuberculosis Patients in Egypt

(2009) Z. H. Helal et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Use of Spoligotyping and Large Sequence Polymorphisms To Study the Population Structure of the Mycobacterium tuberculosis Complex in a Cohort Study of Consecutive Smear-Positive Tuberculosis Cases in The Gambia

(2009) B. C. de Jong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High Diversity of Mycobacterium tuberculosis Genotypes in South Africa and Preponderance of Mixed Infections among ST53 Isolates

(2009) R. Stavrum et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis

(2009) Noel H. Smith et al.   NATURE REVIEWS MICROBIOLOGY

Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

(2009) Iñaki Comas et al.   PLoS One

Autophagy Gene Variant IRGM −261T Contributes to Protection from Tuberculosis Caused by Mycobacterium tuberculosis but Not by M. africanum Strains

(2009) Christopher D. Intemann et al.   PLoS Pathogens

Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences

(2008) Caroline Deshayes et al.   BMC EVOLUTIONARY BIOLOGY

Mycobacterium tuberculosisspoligotypes and drug susceptibility pattern of isolates from tuberculosis patients in peri-urban Kampala, Uganda

(2008) Benon B Asiimwe et al.   BMC INFECTIOUS DISEASES

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

Evaluation and Strategy for Use of MIRU-VNTRplus, a Multifunctional Database for Online Analysis of Genotyping Data and Phylogenetic Identification of Mycobacterium tuberculosis Complex Isolates

(2008) C. Allix-Beguec et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a Neolithic Settlement in the Eastern Mediterranean

(2008) Israel Hershkovitz et al.   PLoS One

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography

(2008) Ruth Hershberg et al.   PLOS BIOLOGY

Origin, Spread and Demography of the Mycobacterium tuberculosis Complex

(2008) Thierry Wirth et al.   PLoS Pathogens