Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function

Dependence and independence of the root clock on the shoot clock in Arabidopsis

(2018) Hong Gil Lee et al.   Genes & Genomics

MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis

(2018) Shengjun Li et al.   PLANT CELL

Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins

(2018) Chin-Mei Lee et al.   PLANT PHYSIOLOGY

Distinct control of PERIOD2 degradation and circadian rhythms by the oncoprotein and ubiquitin ligase MDM2

(2018) JingJing Liu et al.   Science Signaling

Daily humidity oscillation regulates the circadian clock to influence plant physiology

(2018) Musoki Mwimba et al.   Nature Communications

The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing

(2017) Tianran Jia et al.   PLANT CELL

The Arabidopsis U-box E3 ubiquitin ligase PUB30 negatively regulates salt tolerance by facilitating BRI1 kinase inhibitor 1 (BKI1) degradation

(2017) Ming Zhang et al.   PLANT CELL AND ENVIRONMENT

Improvement of Arabidopsis Biomass and Cold, Drought and Salinity Stress Tolerance by Modified Circadian Clock-Associated PSEUDO-RESPONSE REGULATORs

(2016) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

A high resolution map of theArabidopsis thalianadevelopmental transcriptome based on RNA-seq profiling

(2016) Anna V. Klepikova et al.   PLANT JOURNAL

LWD–TCP complex activates the morning gene CCA1 in Arabidopsis

(2016) Jing-Fen Wu et al.   Nature Communications

The dominant negative ARM domain uncovers multiple functions of PUB13 in Arabidopsis immunity, flowering, and senescence

(2015) Jinggeng Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of Evening Complex Associated Proteins inArabidopsisby Affinity Purification and Mass Spectrometry

(2015) He Huang et al.   MOLECULAR & CELLULAR PROTEOMICS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Tissue-specific clocks in Arabidopsis show asymmetric coupling

(2014) Motomu Endo et al.   NATURE

LNK1 and LNK2 Are Transcriptional Coactivators in theArabidopsisCircadian Oscillator

(2014) Qiguang Xie et al.   PLANT CELL

Suppression of Arabidopsis AtPUB30 resulted in increased tolerance to salt stress during germination

(2014) Jae Hwan Hwang et al.   PLANT CELL REPORTS

Strengths and Limitations of Period Estimation Methods for Circadian Data

(2014) Tomasz Zielinski et al.   PLoS One

A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors

(2014) Jose L. Pruneda-Paz et al.   Cell Reports

Splicing and beyond: The many faces of the Prp19 complex

(2013) Sittinan Chanarat et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The Arabidopsis COP9 SIGNALOSOME INTERACTING F-BOX KELCH 1 Protein Forms an SCF Ubiquitin Ligase and Regulates Hypocotyl Elongation

(2013) Anna Franciosini et al.   Molecular Plant

Plant E3 Ligases: Flexible Enzymes in a Sessile World

(2013) Liyuan Chen et al.   Molecular Plant

Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7

(2013) Tiffany Liu et al.   PLANT JOURNAL

Plant F-Box Protein Evolution Is Determined by Lineage-Specific Timing of Major Gene Family Expansion Waves

(2013) Aura Navarro-Quezada et al.   PLoS One

Release of SOS2 kinase from sequestration with GIGANTEA determines salt tolerance in Arabidopsis

(2013) Woe-Yeon Kim et al.   Nature Communications

Accurate timekeeping is controlled by a cycling activator in Arabidopsis

(2013) Polly Yingshan Hsu et al.   eLife

The Ubiquitin Code

(2012) David Komander et al.   Annual Review of Biochemistry

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

LOV Domain-Containing F-Box Proteins: Light-Dependent Protein Degradation Modules in Arabidopsis

(2012) Shogo Ito et al.   Molecular Plant

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Mutation ofArabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1Causes Circadian Clock Defects

(2012) Matthew A. Jones et al.   PLANT CELL

SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis

(2012) X. Wang et al.   PLANT CELL

The U-Box/ARM E3 Ligase PUB13 Regulates Cell Death, Defense, and Flowering Time in Arabidopsis

(2012) W. Li et al.   PLANT PHYSIOLOGY

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neurospora COP9 Signalosome Integrity Plays Major Roles for Hyphal Growth, Conidial Development, and Circadian Function

(2012) Zhipeng Zhou et al.   PLoS Genetics

The Cullin-RING Ubiquitin-Protein Ligases

(2011) Zhihua Hua et al.   Annual Review of Plant Biology

LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock

(2011) Anne Helfer et al.   CURRENT BIOLOGY

REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock

(2011) Reetika Rawat et al.   PLoS Genetics

Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1

(2010) Bong Soo Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The function of the NineTeen Complex (NTC) in regulating spliceosome conformations and fidelity during pre-mRNA splicing

(2010) Rebecca Hogg et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

The Circadian Clock Modulates Water Dynamics and Aquaporin Expression in Arabidopsis Roots

(2010) Tomoyuki Takase et al.   PLANT AND CELL PHYSIOLOGY

RING Domain E3 Ubiquitin Ligases

(2009) Raymond J. Deshaies et al.   Annual Review of Biochemistry

The diversity of plant U-box E3 ubiquitin ligases: from upstream activators to downstream target substrates

(2009) D. Yee et al.   JOURNAL OF EXPERIMENTAL BOTANY

The COP9 Signalosome Is Required for Light-Dependent Timeless Degradation and Drosophila Clock Resetting

(2009) A. Knowles et al.   JOURNAL OF NEUROSCIENCE

The ubiquitin–26S proteasome system at the nexus of plant biology

(2009) Richard D. Vierstra   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response

(2009) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin

(2009) Qing Lu et al.   PLANT JOURNAL

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock

(2009) J. L. Pruneda-Paz et al.   SCIENCE

Two Prp19-Like U-Box Proteins in the MOS4-Associated Complex Play Redundant Roles in Plant Innate Immunity

(2009) Jacqueline Monaghan et al.   PLoS Pathogens

Post-translational Regulation of theArabidopsisCircadian Clock through Selective Proteolysis and Phosphorylation of Pseudo-response Regulator Proteins

(2008) Sumire Fujiwara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH