Identification of Evening Complex Associated Proteins inArabidopsisby Affinity Purification and Mass Spectrometry

ELF3-PIF4 Interaction Regulates Plant Growth Independently of the Evening Complex

(2015) Cristina Nieto et al.   CURRENT BIOLOGY

Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways

(2015) Mani Kant Choudhary et al.   MOLECULAR & CELLULAR PROTEOMICS

Pathogen-secreted proteases activate a novel plant immune pathway

(2015) Zhenyu Cheng et al.   NATURE

Comparative Quantitative Proteomics Analysis of the ABA Response of Roots of Drought-Sensitive and Drought-Tolerant Wheat Varieties Identifies Proteomic Signatures of Drought Adaptability

(2014) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

Distinct roles of FKF1, GIGANTEA, and ZEITLUPE proteins in the regulation of CONSTANS stability inArabidopsisphotoperiodic flowering

(2014) Young Hun Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DAYSLEEPER: a nuclear and vesicular-localized protein that is expressed in proliferating tissues

(2013) Marijn Knip et al.   BMC PLANT BIOLOGY

Quantitative Proteomics-Based Analysis Supports a Significant Role of GTG Proteins in Regulation of ABA Response in Arabidopsis Roots

(2013) Sophie Alvarez et al.   JOURNAL OF PROTEOME RESEARCH

SAINTexpress: Improvements and additional features in Significance Analysis of INTeractome software

(2013) Guoci Teo et al.   Journal of Proteomics

Identification of BZR1-interacting Proteins as Potential Components of the Brassinosteroid Signaling Pathway inArabidopsisThrough Tandem Affinity Purification

(2013) Chunming Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

The CRAPome: a contaminant repository for affinity purification–mass spectrometry data

(2013) Dattatreya Mellacheruvu et al.   NATURE METHODS

ArabidopsisPhytochrome B Promotes SPA1 Nuclear Accumulation to Repress Photomorphogenesis under Far-Red Light

(2013) Xu Zheng et al.   PLANT CELL

TIME FOR COFFEEis an essential component in the maintenance of metabolic homeostasis inArabidopsis thaliana

(2013) Alfredo Sanchez-Villarreal et al.   PLANT JOURNAL

Towards revealing the functions of all genes in plants

(2013) Seung Yon Rhee et al.   TRENDS IN PLANT SCIENCE

ELF4 Regulates GIGANTEA Chromatin Access through Subnuclear Sequestration

(2013) Yumi Kim et al.   Cell Reports

Accurate timekeeping is controlled by a cycling activator in Arabidopsis

(2013) Polly Yingshan Hsu et al.   eLife

(Re)inventing the Circadian Feedback Loop

(2012) Steven A. Brown et al.   DEVELOPMENTAL CELL

Linking photoreceptor excitation to changes in plant architecture

(2012) L. Li et al.   GENES & DEVELOPMENT

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

(2012) Alexandra Pokhilko et al.   Molecular Systems Biology

Peroxiredoxins are conserved markers of circadian rhythms

(2012) Rachel S. Edgar et al.   NATURE

TIME FOR COFFEE Represses Accumulation of the MYC2 Transcription Factor to Provide Time-of-Day Regulation of Jasmonate Signaling inArabidopsis

(2012) Jieun Shin et al.   PLANT CELL

EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock

(2012) E. Herrero et al.   PLANT CELL

Plastids Are Major Regulators of Light Signaling in Arabidopsis

(2012) M. E. Ruckle et al.   PLANT PHYSIOLOGY

Circadian Phase Has Profound Effects on Differential Expression Analysis

(2012) Polly Yingshan Hsu et al.   PLoS One

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

FTIP1 Is an Essential Regulator Required for Florigen Transport

(2012) Lu Liu et al.   PLOS BIOLOGY

LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock

(2011) Anne Helfer et al.   CURRENT BIOLOGY

Temporal Repression of Core Circadian Genes Is Mediated through EARLY FLOWERING 3 in Arabidopsis

(2011) Laura E. Dixon et al.   CURRENT BIOLOGY

A Global Circadian Repressor Controls Antiphasic Expression of Metabolic Genes in Neurospora

(2011) Gencer Sancar et al.   MOLECULAR CELL

Emerging Perspectives on the Mechanisms, Regulation, and Distribution of Light Color Acclimation in Cyanobacteria

(2011) Andrian Gutu et al.   Molecular Plant

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis

(2011) Gang Li et al.   NATURE CELL BIOLOGY

BROTHER OF LUX ARRHYTHMO Is a Component of the Arabidopsis Circadian Clock

(2011) S. Dai et al.   PLANT CELL

A Reduced-Function Allele Reveals ThatEARLY FLOWERING3Repressive Action on the Circadian Clock Is Modulated by Phytochrome Signals inArabidopsis

(2011) Elsebeth Kolmos et al.   PLANT CELL

LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 Form a Positive Feedback Regulatory Loop in theArabidopsisCircadian Clock

(2011) Ying Wang et al.   PLANT CELL

Light inputs shape the Arabidopsis circadian system

(2011) Bénédicte Wenden et al.   PLANT JOURNAL

Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins

(2010) Ying Zhang et al.   ANALYTICAL CHEMISTRY

Circadian Control of Global Gene Expression Patterns

(2010) Colleen J. Doherty et al.   Annual Review of Genetics

Recent advances in charting protein–protein interaction: mass spectrometry-based approaches

(2010) Anne-Claude Gavin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling

(2010) Cheng Dai et al.   EMBO JOURNAL

SAINT: probabilistic scoring of affinity purification–mass spectrometry data

(2010) Hyungwon Choi et al.   NATURE METHODS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis PHYTOCHROME INTERACTING FACTOR Proteins Promote Phytochrome B Polyubiquitination by COP1 E3 Ligase in the Nucleus

(2010) I.-C. Jang et al.   PLANT CELL

F-Box Proteins FKF1 and LKP2 Act in Concert with ZEITLUPE to Control Arabidopsis Clock Progression

(2010) A. Baudry et al.   PLANT CELL

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

(2010) N. Nakamichi et al.   PLANT CELL

Ambient temperature response establishes ELF3 as a required component of the core Arabidopsis circadian clock

(2010) B. Thines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of RACK1 and Protein Kinase C  as Integral Components of the Mammalian Circadian Clock

(2010) M. S. Robles et al.   SCIENCE

An expanding universe of circadian networks in higher plants

(2010) Jose L. Pruneda-Paz et al.   TRENDS IN PLANT SCIENCE

The Circadian System in Higher Plants

(2009) Stacey L. Harmer   Annual Review of Plant Biology

Interaction specificity ofArabidopsis14-3-3 proteins with phototropin receptor kinases

(2009) Stuart Sullivan et al.   FEBS LETTERS

Integrating ELF4 into the circadian system through combined structural and functional studies

(2009) Elsebeth Kolmos et al.   HFSP Journal

Regulation of Iron Homeostasis inArabidopsis thalianaby the Clock Regulator Time for Coffee

(2009) Céline Duc et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Obligate Heterodimerization of Arabidopsis Phytochromes C and E and Interaction with the PIF3 Basic Helix-Loop-Helix Transcription Factor

(2009) T. Clack et al.   PLANT CELL

Delayed fluorescence as a universal tool for the measurement of circadian rhythms in higher plants

(2009) Peter D. Gould et al.   PLANT JOURNAL

The Phytochrome-Interacting Factor PIF7 Negatively Regulates DREB1 Expression under Circadian Control in Arabidopsis

(2009) S. Kidokoro et al.   PLANT PHYSIOLOGY

A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock

(2009) J. L. Pruneda-Paz et al.   SCIENCE

RACK1 genes regulate plant development with unequal genetic redundancy in Arabidopsis

(2008) Jianjun Guo et al.   BMC PLANT BIOLOGY

A systematic forward genetic analysis identified components of the Chlamydomonas circadian system

(2008) T. Matsuo et al.   GENES & DEVELOPMENT

COP1 and ELF3 Control Circadian Function and Photoperiodic Flowering by Regulating GI Stability

(2008) Jae-Woong Yu et al.   MOLECULAR CELL

Biochemical Characterization of Arabidopsis Complexes Containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA Proteins in Light Control of Plant Development

(2008) D. Zhu et al.   PLANT CELL

The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels

(2008) P. Leivar et al.   PLANT CELL

Two New Clock Proteins, LWD1 and LWD2, Regulate Arabidopsis Photoperiodic Flowering

(2008) J.-F. Wu et al.   PLANT PHYSIOLOGY

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

(2008) O. Loudet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The MUT9p kinase phosphorylates histone H3 threonine 3 and is necessary for heritable epigenetic silencing in Chlamydomonas

(2008) J. A. Casas-Mollano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Boosting tandem affinity purification of plant protein complexes

(2008) Jelle Van Leene et al.   TRENDS IN PLANT SCIENCE

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth

(2008) Todd P Michael et al.   PLOS BIOLOGY

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY