Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

Non-capsulated mutants of a chemical-producing Klebsiella pneumoniae strain

(2018) Dong Wei et al.   BIOTECHNOLOGY LETTERS

Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital

(2018) Claire L Gorrie et al.   CLINICAL INFECTIOUS DISEASES

Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria

(2018) Kelly L .Wyres et al.   CURRENT OPINION IN MICROBIOLOGY

Virulence genes in isolates of Klebsiella pneumoniae from the UK during 2016, including among carbapenemase gene-positive hypervirulent K1-ST23 and ‘non-hypervirulent’ types ST147, ST15 and ST383

(2018) Jane F. Turton et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Convergence of carbapenem-resistance and hypervirulence in Klebsiella pneumoniae

(2018) Liang Chen et al.   LANCET INFECTIOUS DISEASES

Emergence of Klebsiella pneumoniae subspecies pneumoniae as a cause of septicaemia in pigs in England

(2018) Cornelia A. Bidewell et al.   PLoS One

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination

(2018) Margaret M. C. Lam et al.   Nature Communications

Emergence of the third-generation cephalosporin-resistant hypervirulent Klebsiella pneumoniae due to the acquisition of a self-transferable blaDHA-1-carrying plasmid by an ST23 strain

(2018) Yingzhou Xie et al.   Virulence

Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae

(2018) Rebekah M. Martin et al.   Frontiers in Cellular and Infection Microbiology

Transmission Dynamics of Hyper-Endemic Multi-Drug Resistant Klebsiella pneumoniae in a Southeast Asian Neonatal Unit: A Longitudinal Study With Whole Genome Sequencing

(2018) Pieter W. Smit et al.   Frontiers in Microbiology

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

(2018) Margaret M. C. Lam et al.   Genome Medicine

Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya

(2017) Sonal P. Henson et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission

(2017) Jessica Martin et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

(2017) Alex Orlek et al.   PLASMID

Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland

(2017) Danesh Moradigaravand et al.   mBio

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae

(2017) Chakkaphan Runcharoen et al.   Genome Medicine

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Detection of Colistin Resistance Genemcr-1in Hypervirulent Klebsiella pneumoniae and Escherichia coli Isolates from an Infant with Diarrhea in China

(2016) Dan-xia Gu et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

(2016) Anna E. Sheppard et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

New CRISPR–Cas systems from uncultivated microbes

(2016) David Burstein et al.   NATURE

Identification and analysis of integrons and cassette arrays in bacterial genomes

(2016) Jean Cury et al.   NUCLEIC ACIDS RESEARCH

Regulation of genetic flux between bacteria by restriction–modification systems

(2016) Pedro H. Oliveira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones

(2016) Kelly L. Wyres et al.   TRENDS IN MICROBIOLOGY

Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population

(2016) I. Russel Lee et al.   Scientific Reports

Characterization of Pre-Antibiotic Era Klebsiella pneumoniae Isolates with Respect to Antibiotic/Disinfectant Susceptibility and Virulence in Galleria mellonella

(2015) Matthew E. Wand et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IntermingledKlebsiella pneumoniaePopulations Between Retail Meats and Human Urinary Tract Infections

(2015) Gregg S. Davis et al.   CLINICAL INFECTIOUS DISEASES

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

(2015) H. Chung The et al.   EMBO Molecular Medicine

Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258

(2015) Kelly L. Wyres et al.   Genome Biology and Evolution

Clinical and molecular characteristics of multi-clone carbapenem-resistant hypervirulent (hypermucoviscous) Klebsiella pneumoniae isolates in a tertiary hospital in Beijing, China

(2015) Bei Yao et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Evolution of Hypervirulent Klebsiella pneumoniae

(2015) Carsten Struve et al.   mBio

Genetic analysis of capsular polysaccharide synthesis gene clusters in 79 capsular types of Klebsiella spp

(2015) Yi-Jiun Pan et al.   Scientific Reports

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Persistence of a pKPN3-Like CTX-M-15-Encoding IncFIIK Plasmid in a Klebsiella pneumonia ST17 Host during Two Years of Intestinal Colonization

(2015) Iren Høyland Löhr et al.   PLoS One

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

(2015) Jolene R. Bowers et al.   PLoS One

Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting

(2014) N. Stoesser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Aerobactin Mediates Virulence and Accounts for Increased Siderophore Production under Iron-Limiting Conditions by Hypervirulent (Hypermucoviscous) Klebsiella pneumoniae

(2014) T. A. Russo et al.   INFECTION AND IMMUNITY

Isolation of a Bacteriophage and Its Depolymerase Specific for K1 Capsule of Klebsiella pneumoniae: Implication in Typing and Treatment

(2014) Tzu-Lung Lin et al.   JOURNAL OF INFECTIOUS DISEASES

Dense genomic sampling identifies highways of pneumococcal recombination

(2014) Claire Chewapreecha et al.   NATURE GENETICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Genotoxic Klebsiella pneumoniae in Taiwan

(2014) Yi-Chyi Lai et al.   PLoS One

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258Klebsiella pneumoniae

(2014) Frank R. DeLeo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding

(2014) Liang Chen et al.   TRENDS IN MICROBIOLOGY

Epidemic Klebsiella pneumoniae ST258 Is a Hybrid Strain

(2014) L. Chen et al.   mBio

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Role of Bacterial Surface Structures on the Interaction of Klebsiella pneumoniae with Phagocytes

(2013) Catalina March et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2

(2011) Michael A. Bachman et al.   INFECTION AND IMMUNITY

The role of Klebsiella pneumoniae rmpA in capsular polysaccharide synthesis and virulence revisited

(2011) C.-R. Hsu et al.   MICROBIOLOGY-SGM

RmpA Regulation of Capsular Polysaccharide Biosynthesis in Klebsiella pneumoniae CG43

(2010) H. Y. Cheng et al.   JOURNAL OF BACTERIOLOGY

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Escherichia coli genes affecting recipient ability in plasmid conjugation: Are there any?

(2009) Daniel Pérez-Mendoza et al.   BMC GENOMICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Virulent Clones of Klebsiella pneumoniae: Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization

(2009) Sylvain Brisse et al.   PLoS One

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

Serum‐Induced Iron‐Acquisition Systems and TonB Contribute to Virulence inKlebsiella pneumoniaeCausing Primary Pyogenic Liver Abscess

(2008) Pei‐Fang Hsieh et al.   JOURNAL OF INFECTIOUS DISEASES

The Major Surface-Associated Saccharides of Klebsiella pneumoniae Contribute to Host Cell Association

(2008) Abigail Clements et al.   PLoS One