IntFOLD: an integrated web resource for high performance protein structure and function prediction

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates

(2017) Ahmad N. Shuid et al.   NUCLEIC ACIDS RESEARCH

ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models

(2017) Ali H. A. Maghrabi et al.   NUCLEIC ACIDS RESEARCH

Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods

(2017) Liam J. McGuffin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12

(2017) Jürgen Haas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of model accuracy estimations in CASP12

(2017) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

VoroMQA: Assessment of protein structure quality using interatomic contact areas

(2017) Kliment Olechnovič et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods

(2017) Luciano A. Abriata et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Methods for estimation of model accuracy in CASP12

(2017) Arne Elofsson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of the template-based modeling in CASP12

(2017) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ResQ: An Approach to Unified Estimation of B -Factor and Residue-Specific Error in Protein Structure Prediction

(2016) Jianyi Yang et al.   JOURNAL OF MOLECULAR BIOLOGY

Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies

(2015) Jennifer Atkins et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences: Figure 1.

(2015) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

(2015) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system

(2015) Tiffany B. Taylor et al.   SCIENCE

Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling

(2015) Armin Meier et al.   PLoS Computational Biology

In silicoidentification and three-dimensional modelling of the missense mutation in ADAMTS2 in a sheep flock with dermatosparaxis

(2014) Luis V. Monteagudo et al.   VETERINARY DERMATOLOGY

SOcK, MiSTs, MASK and STicKs: the GCKIII (germinal centre kinase III) kinases and their heterologous protein–protein interactions

(2013) Peter H. Sugden et al.   BIOCHEMICAL JOURNAL

Protein threading using context-specific alignment potential

(2013) J. Ma et al.   BIOINFORMATICS

The mysterious presence of a 5-methylcytosine oxidase in theDrosophilagenome

(2013) Thomas L Dunwell et al.   CELL CYCLE

The FunFOLD2 server for the prediction of protein–ligand interactions

(2013) Daniel B. Roche et al.   NUCLEIC ACIDS RESEARCH

Assessment of the assessment: Evaluation of the model quality estimates in CASP10

(2013) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein Modeling: What Happened to the “Protein Structure Gap”?

(2013) Torsten Schwede   STRUCTURE

A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3)

(2012) Stephen J. Fuller et al.   BIOCHEMICAL JOURNAL

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

(2012) Maria T. Buenavista et al.   BIOINFORMATICS

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

(2011) Daniel B Roche et al.   BMC BIOINFORMATICS

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei

(2011) Laurence V. Bindschedler et al.   METHODS

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

(2011) D. B. Roche et al.   NUCLEIC ACIDS RESEARCH

Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method

(2011) Liam J. McGuffin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand-binding residue predictions in CASP9

(2011) Tobias Schmidt et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison

(2010) Mindaugas Margelevičius et al.   BMC BIOINFORMATICS

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Prediction of global and local model quality in CASP8 using the ModFOLD server

(2009) Liam J. McGuffin   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of disorder predictions in CASP8

(2009) Orly Noivirt-Brik et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

(2008) Liam J. McGuffin   BIOINFORMATICS