Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy

The vaginal microbiome and preterm birth

(2019) Jennifer M. Fettweis et al.   NATURE MEDICINE

Vaginal microbiota and susceptibility to HIV

(2018) McKenna C. Eastment et al.   AIDS

Women and Their Microbes: The Unexpected Friendship

(2018) Jessica A. Younes et al.   TRENDS IN MICROBIOLOGY

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

(2018) Daniela S. Aliaga Goltsman et al.   GENOME RESEARCH

Species-level functional profiling of metagenomes and metatranscriptomes

(2018) Eric A. Franzosa et al.   NATURE METHODS

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

(2017) Benjamin J. Callahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The vaginal microbiome of pregnant women is less rich and diverse, with lower prevalence of Mollicutes, compared to non-pregnant women

(2017) Aline C. Freitas et al.   Scientific Reports

Mutations in fetal genes involved in innate immunity and host defense against microbes increase risk of preterm premature rupture of membranes (PPROM)

(2017) Bhavi P. Modi et al.   Molecular Genetics & Genomic Medicine

A Systematic Review of DNA Methylation and Preterm Birth in African American Women

(2016) Veronica Barcelona de Mendoza et al.   Biological Research for Nursing

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

(2016) Hardik I. Parikh et al.   BMC BIOINFORMATICS

The Human Microbiome during Bacterial Vaginosis

(2016) Andrew B. Onderdonk et al.   CLINICAL MICROBIOLOGY REVIEWS

The Vaginal Microbiome: Current Understanding and Future Directions

(2016) David H. Martin et al.   JOURNAL OF INFECTIOUS DISEASES

Menopause and the vaginal microbiome

(2016) Alicia L. Muhleisen et al.   MATURITAS

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

(2015) Rachid Ounit et al.   BMC GENOMICS

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

(2015) J Paul Brooks et al.   BMC MICROBIOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Temporal and spatial variation of the human microbiota during pregnancy

(2015) Daniel B. DiGiulio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health

(2015) Mariya I. Petrova et al.   Frontiers in Physiology

The vaginal microbiome during pregnancy and the postpartum period in a European population

(2015) David A. MacIntyre et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Incidence and risk factors of preterm birth in a rural Bangladeshi cohort

(2014) Rashed Shah et al.   BMC Pediatrics

The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease

(2014)   Cell Host & Microbe

Human α-amylase Present in Lower-Genital-Tract Mucosal Fluid Processes Glycogen to Support Vaginal Colonization by Lactobacillus

(2014) Gregory T. Spear et al.   JOURNAL OF INFECTIOUS DISEASES

Early Pregnancy Changes in Bacterial Vaginosis-Associated Bacteria and Preterm Delivery

(2014) Deborah B. Nelson et al.   PAEDIATRIC AND PERINATAL EPIDEMIOLOGY

Pregnancy's Stronghold on the Vaginal Microbiome

(2014) Marina R. S. Walther-António et al.   PLoS One

The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women

(2014) Roberto Romero et al.   Microbiome

Identification of intracellular bacteria in the basal plate of the human placenta in term and preterm gestations

(2013) Molly J. Stout et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

The contribution of genetic and environmental factors to the duration of pregnancy

(2013) Timothy P. York et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Diversity of the Vaginal Microbiome Correlates With Preterm Birth

(2013) Richard W. Hyman et al.   Reproductive Sciences

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

(2013) Jacques Ravel et al.   Microbiome

Vaginal Microbiome: Rethinking Health and Disease

(2012) Bing Ma et al.   Annual Review of Microbiology

A pure L1-norm principal component analysis

(2012) J.P. Brooks et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars

(2012) A. Ahmed et al.   JOURNAL OF BACTERIOLOGY

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

(2012) Kjersti Aagaard et al.   PLoS One

Temporal Dynamics of the Human Vaginal Microbiota

(2012) P. Gajer et al.   Science Translational Medicine

Understanding vaginal microbiome complexity from an ecological perspective

(2012) Roxana J. Hickey et al.   Translational Research

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Gardnerella vaginalis comprises three distinct genotypes of which only two produce sialidase

(2011) Guido Lopes dos Santos Santiago et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Comparison of Self-Collected and Physician-Collected Vaginal Swabs for Microbiome Analysis

(2010) L. J. Forney et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Temporal Variability of Human Vaginal Bacteria and Relationship with Bacterial Vaginosis

(2010) Sujatha Srinivasan et al.   PLoS One

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The worldwide incidence of preterm birth: a systematic review of maternal mortality and morbidity

(2009) Stacey Beck et al.   BULLETIN OF THE WORLD HEALTH ORGANIZATION

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

High Vaginal Concentrations of Atopobium vaginae and Gardnerella vaginalis in Women Undergoing Preterm Labor

(2009) Jean Pierre Menard et al.   OBSTETRICS AND GYNECOLOGY

Nucleotide Biosynthesis Is Critical for Growth of Bacteria in Human Blood

(2008) Shalaka Samant et al.   PLoS Pathogens