Fungal Community Composition and Potential Depth-Related Driving Factors Impacting Distribution Pattern and Trophic Modes from Epi- to Abyssopelagic Zones of the Western Pacific Ocean

Fungal diversity in deep-sea sediments of a hydrothermal vent system in the Southwest Indian Ridge

(2018) Wei Xu et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Spatiotemporal Distribution and Assemblages of Planktonic Fungi in the Coastal Waters of the Bohai Sea

(2018) Yaqiong Wang et al.   Frontiers in Microbiology

Coastal marine habitats harbor novel early-diverging fungal diversity

(2017) Kathryn T. Picard   Fungal Ecology

OUP accepted manuscript

(2017)   ICES JOURNAL OF MARINE SCIENCE

Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils

(2017) Xian Xiao et al.   MOLECULAR ECOLOGY

Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China Sea as a model

(2017) Wei Li et al.   MOLECULAR ECOLOGY

Bacterial Succession on Sinking Particles in the Ocean's Interior

(2017) Erik A. Pelve et al.   Frontiers in Microbiology

Vertical stratification of bacterial communities driven by multiple environmental factors in the waters (0–5000 m) off the Galician coast (NW Iberian margin)

(2016) Vladimir Dobal-Amador et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Spatial distribution of aquatic marine fungi across the western Arctic and sub-arctic

(2016) Brandon T. Hassett et al.   ENVIRONMENTAL MICROBIOLOGY

Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water

(2016) Alexander H. Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Chytrids dominate arctic marine fungal communities

(2016) B. T. Hassett et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of an intense water column mixing (0-1500 m) on prokaryotic diversity and activities during an open-ocean convection event in the NW Mediterranean Sea

(2016) Tatiana Severin et al.   ENVIRONMENTAL MICROBIOLOGY

Aquatic fungal ecology – How does it differ from terrestrial?

(2016) Felix Bärlocher et al.   Fungal Ecology

Global biogeography of marine fungi is shaped by the environment

(2016) Kaho H. Tisthammer et al.   Fungal Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance

(2016) Joe D Taylor et al.   ISME Journal

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow

(2016) Alexander B Bochdansky et al.   ISME Journal

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

(2016) Vinita Deshpande et al.   MYCOLOGIA

Partitioning of fungal assemblages across different marine habitats

(2016) Thomas Charles Jeffries et al.   Environmental Microbiology Reports

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy

(2016) Maria G. Pachiadaki et al.   Frontiers in Microbiology

Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding

(2016) Wei Li et al.   Scientific Reports

Classification of marine Ascomycota, Basidiomycota, Blastocladiomycota and Chytridiomycota

(2015) E. B. Gareth Jones et al.   FUNGAL DIVERSITY

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

(2015) R. Henrik Nilsson et al.   MICROBES AND ENVIRONMENTS

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Molecular diversity and distribution of marine fungi across 130 European environmental samples

(2015) Thomas A. Richards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of hydrostatic pressure on yeasts isolated from deep-sea hydrothermal vents

(2015) Gaëtan Burgaud et al.   RESEARCH IN MICROBIOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths

(2014) Vanessa Rédou et al.   FEMS MICROBIOLOGY ECOLOGY

Fungi ahoy! Diversity on marine wooden substrata in the high North

(2014) Teppo Rämä et al.   Fungal Ecology

Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome

(2014) Bonnie L Hurwitz et al.   ISME Journal

High Fungal Diversity and Abundance Recovered in the Deep-Sea Sediments of the Pacific Ocean

(2014) Wei Xu et al.   MICROBIAL ECOLOGY

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

(2013) William Orsi et al.   PLoS One

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Fungal diversity in deep-sea extreme environments

(2012) Yuriko Nagano et al.   Fungal Ecology

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microbial eukaryote life in the new hypersaline deep-sea basin Thetis

(2011) Alexandra Stock et al.   EXTREMOPHILES

Assessment of fungal diversity in deep-sea sediments by multiple primer approach

(2011) Purnima Singh et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

(2010) T Pommier et al.   AQUATIC MICROBIAL ECOLOGY

Marine subsurface eukaryotes: the fungal majority

(2010) Virginia P. Edgcomb et al.   ENVIRONMENTAL MICROBIOLOGY

Persistence of bacterial and archaeal communities in sea ice through an Arctic winter

(2010) R. Eric Collins et al.   ENVIRONMENTAL MICROBIOLOGY

Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna

(2010) Gaëtan Burgaud et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics

(2010) Purnima Singh et al.   FUNGAL DIVERSITY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal diversity in oxygen-depleted regions of  the Arabian Sea revealed by targeted environmental sequencing combined with cultivation

(2009) Cathrine S. Jebaraj et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea

(2009) Jean-François Ghiglione et al.   FEMS MICROBIOLOGY LETTERS

Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters

(2009) Zheng Gao et al.   ISME Journal

Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata

(2008) Z. Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA