Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Plant cultivars imprint the rhizosphere bacterial community composition and association networks

(2017) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking soil fungal community structure and function to soil organic carbon chemical composition in intensively managed subtropical bamboo forests

(2017) Yongchun Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China

(2017) Bin Ma et al.   mSystems

Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe

(2016) R.E. Creamer et al.   APPLIED SOIL ECOLOGY

Linking species functional roles to their network roles

(2016) Camille Coux et al.   ECOLOGY LETTERS

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Agricultural matrix affects differently the alpha and beta structural and functional diversity of soil microbial communities in a fragmented Mediterranean holm oak forest

(2016) Dulce Flores-Rentería et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Changes in soil microbial community structure and activity in a cedar plantation invaded by moso bamboo

(2015) Ed-Haun Chang et al.   APPLIED SOIL ECOLOGY

Current and potential carbon stocks in Moso bamboo forests in China

(2015) Pingheng Li et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Impacts of altered precipitation regimes on soil communities and biogeochemistry in arid and semi-arid ecosystems

(2014) Uffe N. Nielsen et al.   GLOBAL CHANGE BIOLOGY

Do bacterial and fungal communities assemble differently during primary succession?

(2014) S. K. Schmidt et al.   MOLECULAR ECOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate and litter quality differently modulate the effects of soil fauna on litter decomposition across biomes

(2013) Pablo García-Palacios et al.   ECOLOGY LETTERS

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Random Sampling Process Leads to Overestimation of  -Diversity of Microbial Communities

(2013) J. Zhou et al.   mBio

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season

(2012) John Davison et al.   PLoS One

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Growth of saprotrophic fungi and bacteria in soil

(2011) Johannes Rousk et al.   FEMS MICROBIOLOGY ECOLOGY

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

(2011) Charles K Lee et al.   ISME Journal

Illumina-based analysis of microbial community diversity

(2011) Patrick H Degnan et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Modelling the effect of size on the aerial dispersal of microorganisms

(2011) David M. Wilkinson et al.   JOURNAL OF BIOGEOGRAPHY

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape

(2011) Lucie Zinger et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

The role of ectomycorrhizal communities in forest ecosystem processes: New perspectives and emerging concepts

(2010) Pierre-Emmanuel Courty et al.   SOIL BIOLOGY & BIOCHEMISTRY

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Changes of carbon stocks in bamboo stands in China during 100 years

(2009) Xiangang Chen et al.   FOREST ECOLOGY AND MANAGEMENT

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE