Characterization of Microbiota Associated with Digesta and Mucosa in Different Regions of Gastrointestinal Tract of Nursery Pigs

Disbiome database: linking the microbiome to disease

(2018) Yorick Janssens et al.   BMC MICROBIOLOGY

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions

(2018) Daniel Crespo-Piazuelo et al.   Scientific Reports

Growth performance of piglets during the first two weeks of lactation affects the development of the intestinal microbiota

(2017) B. Morissette et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Factors Influencing the Gut Microbiota, Inflammation, and Type 2 Diabetes

(2017) Li Wen et al.   JOURNAL OF NUTRITION

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Gut Microbiota Dysbiosis in Postweaning Piglets: Understanding the Keys to Health

(2017) Raphaële Gresse et al.   TRENDS IN MICROBIOLOGY

Microbial shifts in the porcine distal gut in response to diets supplemented with Enterococcus Faecalis as alternatives to antibiotics

(2017) Pinghua Li et al.   Scientific Reports

Characterization of the Culturable Subpopulations of Lactobacillus in the Chicken Intestinal Tract as a Resource for Probiotic Development

(2017) Bishnu Adhikari et al.   Frontiers in Microbiology

The Maturing Development of Gut Microbiota in Commercial Piglets during the Weaning Transition

(2017) Limei Chen et al.   Frontiers in Microbiology

Differences in Microbiota Membership along the Gastrointestinal Tract of Piglets and Their Differential Alterations Following an Early-Life Antibiotic Intervention

(2017) Chunlong Mu et al.   Frontiers in Microbiology

Meta-analysis To Define a Core Microbiota in the Swine Gut

(2017) Devin B. Holman et al.   mSystems

A carvacrol–thymol blend decreased intestinal oxidative stress and influenced selected microbes without changing the messenger RNA levels of tight junction proteins in jejunal mucosa of weaning piglets

(2016) H.-K. Wei et al.   Animal

Microbial composition in different gut locations of weaning piglets receiving antibiotics

(2016) Kaifeng Li et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model

(2016) Gaorui Bian et al.   ENVIRONMENTAL MICROBIOLOGY

Impacts of Gut Bacteria on Human Health and Diseases

(2015) Yu-Jie Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations

(2015) Özgün C O Umu et al.   Microbiome

Diet shapes the gut microbiome of pigs during nursing and weaning

(2015) Steven A. Frese et al.   Microbiome

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Impact of antibiotic use in the swine industry

(2014) Mary D Barton   CURRENT OPINION IN MICROBIOLOGY

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

(2014) Torey Looft et al.   ISME Journal

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Prevalence of Campylobacter spp. relative to other enteric pathogens in grow-finish pigs with diarrhea

(2013) Eric Burrough et al.   ANAEROBE

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

The biological stress of early weaned piglets

(2013) Joy M Campbell et al.   Journal of Animal Science and Biotechnology

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin

(2012) H. B. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS