RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys
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Title
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys
Authors
Keywords
Microbial ecology, Short subunit ribosomal RNA, Microbial community profiling, Sequence analysis
Journal
BMC BIOINFORMATICS
Volume 17, Issue S19, Pages -
Publisher
Springer Nature
Online
2016-12-22
DOI
10.1186/s12859-016-1378-x
References
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Related references
Note: Only part of the references are listed.- MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
- (2016) Daniel H. Huson et al. PLoS Computational Biology
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- (2015) Jiarong Guo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data
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- Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
- (2015) Mads Albertsen et al. PLoS One
- riboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted Metagenomics
- (2015) Matteo Ramazzotti et al. Frontiers in Genetics
- Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
- (2014) Mikhail Tikhonov et al. ISME Journal
- Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
- (2013) Ramiro Logares et al. ENVIRONMENTAL MICROBIOLOGY
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Ribosomal Database Project: data and tools for high throughput rRNA analysis
- (2013) James R. Cole et al. NUCLEIC ACIDS RESEARCH
- Is metagenomics resolving identification of functions in microbial communities?
- (2013) Ludmila Chistoserdova Microbial Biotechnology
- SSuMMo: rapid analysis, comparison and visualization of microbial communities
- (2012) Alex L. B. Leach et al. BIOINFORMATICS
- Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets
- (2011) Johan Bengtsson et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
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- (2011) B. J. Haas et al. GENOME RESEARCH
- rRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries
- (2011) Jae-Hak Lee et al. JOURNAL OF MICROBIOLOGY
- V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
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- (2010) J Gregory Caporaso et al. NATURE METHODS
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