Shifts in gene expression profiles are associated with weak and strong Crassulacean acid metabolism

Plant Carbonic Anhydrases: Structures, Locations, Evolution, and Physiological Roles

(2017) Robert J. DiMario et al.   Molecular Plant

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae)

(2016) Michael R. McKain et al.   AMERICAN JOURNAL OF BOTANY

Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids

(2016) Hua Deng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae)

(2016) Karolina Heyduk et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

A Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced Stomatal Closure

(2016) Hanna Hõrak et al.   PLANT CELL

Elevated CO 2 -Induced Responses in Stomata Require ABA and ABA Signaling

(2015) Caspar Chater et al.   CURRENT BIOLOGY

Gas exchange and leaf anatomy of a C3–CAM hybrid,Yucca gloriosa(Asparagaceae)

(2015) Karolina Heyduk et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multilocus phylogenetic inference in subfamily Chlorogaloideae and related genera of Agavaceae – Informing questions in taxonomy at multiple ranks

(2015) Jenny K. Archibald et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The pineapple genome and the evolution of CAM photosynthesis

(2015) Ray Ming et al.   NATURE GENETICS

Eddy covariance captures four-phase crassulacean acid metabolism (CAM) gas exchange signature inAgave

(2015) Nick A. Owen et al.   PLANT CELL AND ENVIRONMENT

Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare

(2015) Dominik Brilhaus et al.   PLANT PHYSIOLOGY

Phosphoenolpyruvate Carboxylase in Arabidopsis Leaves Plays a Crucial Role in Carbon and Nitrogen Metabolism

(2015) Jianghua Shi et al.   PLANT PHYSIOLOGY

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism

(2014) Katia Silvera et al.   JOURNAL OF EXPERIMENTAL BOTANY

Facultative crassulacean acid metabolism (CAM) plants: powerful tools for unravelling the functional elements of CAM photosynthesis

(2014) K. Winter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Engineering crassulacean acid metabolism to improve water-use efficiency

(2014) Anne M. Borland et al.   TRENDS IN PLANT SCIENCE

Phylogenetic Analysis of Gene Expression

(2013) C. W. Dunn et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Informing the improvement and biodesign of crassulacean acid metabolism via system dynamics modelling

(2013) Anne M. Borland et al.   NEW PHYTOLOGIST

PYR/RCAR Receptors Contribute to Ozone-, Reduced Air Humidity-, Darkness-, and CO2-Induced Stomatal Regulation

(2013) E. Merilo et al.   PLANT PHYSIOLOGY

The remarkable diversity of plant PEPC (phosphoenolpyruvate carboxylase): recent insights into the physiological functions and post-translational controls of non-photosynthetic PEPCs

(2011) Brendan O'Leary et al.   BIOCHEMICAL JOURNAL

Central functions of bicarbonate in S-type anion channel activation and OST1 protein kinase in CO2signal transduction in guard cell

(2011) Shaowu Xue et al.   EMBO JOURNAL

Induction and reversal of crassulacean acid metabolism in Calandrinia polyandra: effects of soil moisture and nutrients

(2011) Klaus Winter et al.   FUNCTIONAL PLANT BIOLOGY

Comparison of the water-soluble carbohydrate composition and fructan structures of Agave tequilana plants of different ages

(2010) Javier Arrizon et al.   FOOD CHEMISTRY

Evolution along the crassulacean acid metabolism continuum

(2010) Katia Silvera et al.   FUNCTIONAL PLANT BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The CBL-CIPK Ca2+-decoding signaling network: function and perspectives

(2009) Stefan Weinl et al.   NEW PHYTOLOGIST

A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells

(2009) Sung Chul Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)

(2008) John C. Cushman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification

(2007) C. I. Smith et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES