Identification of Loci and Candidate Genes Responsible for Fiber Length in Upland Cotton (Gossypium hirsutum L.) via Association Mapping and Linkage Analyses

The phosphatidylinositol synthase gene (GhPIS) contributes to longer, stronger, and finer fibers in cotton

(2018) Qin Long et al.   MOLECULAR GENETICS AND GENOMICS

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

Genome-wide association study identified genetic variations and candidate genes for plant architecture component traits in Chinese upland cotton

(2018) Junji Su et al.   THEORETICAL AND APPLIED GENETICS

Genetic Map Construction and Fiber Quality QTL Mapping Using the CottonSNP80K Array in Upland Cotton

(2018) Zhaoyun Tan et al.   Frontiers in Plant Science

GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers

(2018) Ruixian Liu et al.   Frontiers in Plant Science

A high density SLAF-SNP genetic map and QTL detection for fibre quality traits in Gossypium hirsutum

(2018) Iftikhar Ali et al.   BMC GENOMICS

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

(2017) Maojun Wang et al.   NATURE GENETICS

Genetics and evolution of MIXTA genes regulating cotton lint fiber development

(2017) Huaitong Wu et al.   NEW PHYTOLOGIST

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide association study discovered candidate genes of Verticillium wilt resistance in upland cotton (Gossypium hirsutum L.)

(2017) Tinggang Li et al.   PLANT BIOTECHNOLOGY JOURNAL

High-density genetic linkage map construction by F2 populations and QTL analysis of early-maturity traits in upland cotton (Gossypium hirsutum L.)

(2017) Libei Li et al.   PLoS One

High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

(2016) Xiaoyun Jia et al.   BMC GENOMICS

Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

(2016) Muhammad Jamshed et al.   BMC GENOMICS

Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China

(2016) Xinhui Nie et al.   BMC GENOMICS

Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines

(2016) Zhiqiang Zhou et al.   BMC GENOMICS

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Identification of stable QTLs for seed oil content by combined linkage and association mapping in Brassica napus

(2016) Fengming Sun et al.   PLANT SCIENCE

Combined Linkage and Association Mapping Reveals QTL and Candidate Genes for Plant and Ear Height in Maize

(2016) Xiaopeng Li et al.   Frontiers in Plant Science

Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice

(2016) Zhongmin Han et al.   Frontiers in Plant Science

Genome-Wide SNP Linkage Mapping and QTL Analysis for Fiber Quality and Yield Traits in the Upland Cotton Recombinant Inbred Lines Population

(2016) Cong Li et al.   Frontiers in Plant Science

Two genomic regions associated with fiber quality traits in Chinese upland cotton under apparent breeding selection

(2016) Junji Su et al.   Scientific Reports

Genomic consequences of selection and genome-wide association mapping in soybean

(2015) Zixiang Wen et al.   BMC GENOMICS

Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum × G. barbadense populations

(2015) Joseph I Said et al.   MOLECULAR GENETICS AND GENOMICS

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Loci and candidate gene identification for resistance toSclerotinia sclerotiorumin soybean (Glycine maxL. Merr.) via association and linkage maps

(2015) Xue Zhao et al.   PLANT JOURNAL

A transposable element in a NAC gene is associated with drought tolerance in maize seedlings

(2015) Hude Mao et al.   Nature Communications

QTL Mapping for Fiber and Yield Traits in Upland Cotton under Multiple Environments

(2015) Hantao Wang et al.   PLoS One

Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

(2014) David D Fang et al.   BMC GENOMICS

Identifying QTL for fiber quality traits with three upland cotton (Gossypium hirsutum L.) populations

(2014) Qianshun Shao et al.   EUPHYTICA

Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean

(2014) Humira Sonah et al.   PLANT BIOTECHNOLOGY JOURNAL

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton

(2013) Joseph I Said et al.   BMC GENOMICS

The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication

(2013) Bo Wen et al.   JOURNAL OF EXPERIMENTAL BOTANY

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Molecular Mechanisms of Fiber Differential Development between G. barbadense and G. hirsutum Revealed by Genetical Genomics

(2012) Xiangdong Chen et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

(2011) Ke Zhang et al.   MOLECULAR BREEDING

Overexpression of a Potato Sucrose Synthase Gene in Cotton Accelerates Leaf Expansion, Reduces Seed Abortion, and Enhances Fiber Production

(2011) Shou-Min Xu et al.   Molecular Plant

Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population

(2010) Jean-Marc Lacape et al.   BMC PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Gibberellin 20-oxidase promotes initiation and elongation of cotton fibers by regulating gibberellin synthesis

(2010) Yue-Hua Xiao et al.   JOURNAL OF PLANT PHYSIOLOGY

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SNP identification in crop plants

(2009) Martin W Ganal et al.   CURRENT OPINION IN PLANT BIOLOGY

Developmental and molecular physiological evidence for the role of phosphoenolpyruvate carboxylase in rapid cotton fibre elongation

(2009) Xiao-Rong Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Cloning and characterization of a calcium dependent protein kinase gene associated with cotton fiber development

(2008) Quan-Sheng Huang et al.   PLANT CELL REPORTS