Genome-wide association study identified genetic variations and candidate genes for plant architecture component traits in Chinese upland cotton

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

(2016) Xiaoyun Jia et al.   BMC GENOMICS

Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton

(2016) Junji Su et al.   BMC GENOMICS

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

(2016) Samuel Crowell et al.   Nature Communications

Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton

(2016) Duke Pauli et al.   G3-Genes Genomes Genetics

Genome-Wide Association Study for Nine Plant Architecture Traits in Sorghum

(2016) Jing Zhao et al.   Plant Genome

Genetic variation and association mapping for 12 agronomic traits in indica rice

(2015) Qing Lu et al.   BMC GENOMICS

Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD sequencing

(2015) H. Wang et al.   DNA RESEARCH

Yield components and quality of intercropped cotton in response to mepiquat chloride and plant density

(2015) Lili Mao et al.   FIELD CROPS RESEARCH

Association mapping and favourable allele exploration for plant architecture traits in upland cotton (Gossypium hirsutum L.) accessions

(2015) C. Q. LI et al.   JOURNAL OF AGRICULTURAL SCIENCE

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Dynamic QTL mapping for plant height in Upland cotton (Gossypium hirsutum)

(2015) Lianguang Shang et al.   PLANT BREEDING

Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.)

(2015) X. Liu et al.   PLANT CELL REPORTS

Dual functions of GmTOE4a in the regulation of photoperiod-mediated flowering and plant morphology in soybean

(2015) Xiaohui Zhao et al.   PLANT MOLECULAR BIOLOGY

Genetic mapping of the nulliplex-branch gene (gb_nb1) in cotton using next-generation sequencing

(2015) Wei Chen et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association study of 29 morphological traits in Aegilops tauschii

(2015) Yaxi Liu et al.   Scientific Reports

Association mapping and favourable allele exploration for plant architecture traits in upland cotton (Gossypium hirsutum L.) accessions

(2015) C. Q. LI et al.   JOURNAL OF AGRICULTURAL SCIENCE

Molecular Mapping of Restriction-Site Associated DNA Markers in Allotetraploid Upland Cotton

(2015) Yangkun Wang et al.   PLoS One

A versatile system for functional analysis of genes and microRNAs in cotton

(2014) Zhouhang Gu et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of quantitative trait loci with main and epistatic effects for plant architecture traits in Upland cotton (Gossypium hirsutumL.)

(2014) Cheng-Qi Li et al.   PLANT BREEDING

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies

(2013) Wanneng Yang et al.   CURRENT OPINION IN PLANT BIOLOGY

Managing mepiquat chloride and plant density for optimal yield and quality of cotton

(2013) Xiaoming Ren et al.   FIELD CROPS RESEARCH

Crop growth, light utilization and yield of relay intercropped cotton as affected by plant density and a plant growth regulator

(2013) Lili Mao et al.   FIELD CROPS RESEARCH

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

The AP2-like gene NsAP2 from water lily is involved in floral organogenesis and plant height

(2012) Huolin Luo et al.   JOURNAL OF PLANT PHYSIOLOGY

Manipulating plant architecture with members of the CETS gene family

(2012) Roisin C. McGarry et al.   PLANT SCIENCE

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Effects of plant density and nitrogen and potassium fertilization on cotton yield and uptake of major nutrients in two fields with varying fertility

(2010) Hezhong Dong et al.   FIELD CROPS RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Quantitative trait loci controlling plant architectural traits in cotton

(2009) Xianliang Song et al.   PLANT SCIENCE