Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines

Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

(2015) Chunhui Li et al.   BMC BIOLOGY

An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

(2015) Hongjun Liu et al.   BMC GENOMICS

Variation detection based on next-generation sequencing of type Chinese 1 strains of Toxoplasma gondii with different virulence from China

(2015) Weisheng Cheng et al.   BMC GENOMICS

A rare SNP mutation in Brachytic2 moderately reduces plant height and increases yield potential in maize

(2015) Anqi Xing et al.   JOURNAL OF EXPERIMENTAL BOTANY

Construction of a high-density DArTseq SNP-based genetic map and identification of genomic regions with segregation distortion in a genetic population derived from a cross between feral and cultivated-type watermelon

(2015) Runsheng Ren et al.   MOLECULAR GENETICS AND GENOMICS

Dissection of the genetic architecture underlying the plant density response by mapping plant height-related traits in maize (Zea mays L.)

(2015) Lixia Ku et al.   MOLECULAR GENETICS AND GENOMICS

Genomic, Transcriptomic, and Phenomic Variation Reveals the Complex Adaptation of Modern Maize Breeding

(2015) Haijun Liu et al.   Molecular Plant

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F2 maize population

(2014) Zongliang Chen et al.   BMC GENOMICS

Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max

(2014) Bin Li et al.   BMC GENOMICS

The Genetic Architecture Of Maize Height

(2014) Jason A. Peiffer et al.   GENETICS

Quantitative trait locus analysis for ear height in maize based on a recombinant inbred line population

(2014) Z.Q. Li et al.   GENETICS AND MOLECULAR RESEARCH

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genetic analysis of agronomic traits associated with plant architecture by QTL mapping in maize

(2013) Z.P. Zheng et al.   GENETICS AND MOLECULAR RESEARCH

Aegilops tauschiisingle nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

(2013) Jirui Wang et al.   NEW PHYTOLOGIST

Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods

(2012) Guihua Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

ZmGA3ox2, a candidate gene for a major QTL,qPH3.1, for plant height in maize

(2012) Feng Teng et al.   PLANT JOURNAL

MYB103 is required forFERULATE-5-HYDROXYLASEexpression and syringyl lignin biosynthesis in Arabidopsis stems

(2012) David Öhman et al.   PLANT JOURNAL

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Genetic composition of yield heterosis in an elite rice hybrid

(2012) G. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic dissection of maize phenology using an intraspecific introgression library

(2011) Silvio Salvi et al.   BMC PLANT BIOLOGY

MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes

(2011) Ruiqin Zhong et al.   PLANT AND CELL PHYSIOLOGY

Cellulose Synthase-Like D1 Is Integral to Normal Cell Division, Expansion, and Leaf Development in Maize

(2011) C. T. Hunter et al.   PLANT PHYSIOLOGY

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genome-Wide Association Study Identifies Candidate Genes That Affect Plant Height in Chinese Elite Maize (Zea mays L.) Inbred Lines

(2011) Jianfeng Weng et al.   PLoS One

Stability of QTL Across Environments and QTL-by-Environment Interactions for Plant and Ear Height in Maize

(2010) Yan ZHANG et al.   Agricultural Sciences in China

High-Resolution Detection of Identity by Descent in Unrelated Individuals

(2010) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Statistical properties of QTL linkage mapping in biparental genetic populations

(2010) H Li et al.   HEREDITY

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Maize DELLA Proteins dwarf plant8 and dwarf plant9 as Modulators of Plant Development

(2010) Shai J. Lawit et al.   PLANT AND CELL PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

High-Throughput Genetic Mapping of Mutants via Quantitative Single Nucleotide Polymorphism Typing

(2009) S. Liu et al.   GENETICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis

(2009) J. Zhou et al.   PLANT CELL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Plant cell walls: Protecting the barrier from degradation by microbial enzymes

(2009) Stijn Lagaert et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY