rBAN: retro-biosynthetic analysis of nonribosomal peptides

HELM Software for Biopolymers

(2017) Jeff Milton et al.   Journal of Chemical Information and Modeling

Natural Products as Sources of New Drugs from 1981 to 2014

(2016) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching

(2016) Chris A Dejong et al.   Nature Chemical Biology

Structural and mutational analysis of the nonribosomal peptide synthetase heterocyclization domain provides insight into catalysis

(2016) Kristjan Bloudoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing

(2015) Areski Flissi et al.   NUCLEIC ACIDS RESEARCH

PubChem Substance and Compound databases

(2015) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

Smiles2Monomers: a link between chemical and biological structures for polymers

(2015) Yoann Dufresne et al.   Journal of Cheminformatics

molBLOCKS: decomposing small molecule sets and uncovering enriched fragments

(2014) Dario Ghersi et al.   BIOINFORMATICS

Prediction of New Bioactive Molecules using a Bayesian Belief Network

(2014) Ammar Abdo et al.   Journal of Chemical Information and Modeling

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

(2013) Shuchismita Dutta et al.   BIOPOLYMERS

Ribosome-independent biosynthesis of biologically active peptides: Application of synthetic biology to generate structural diversity

(2012) Tobias W. Giessen et al.   FEBS LETTERS

HELM: A Hierarchical Notation Language for Complex Biomolecule Structure Representation

(2012) Tianhong Zhang et al.   Journal of Chemical Information and Modeling

A new fingerprint to predict nonribosomal peptides activity

(2012) Ammar Abdo et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Structure and noncanonical chemistry of nonribosomal peptide biosynthetic machinery

(2012) Heather L. Condurso et al.   NATURAL PRODUCT REPORTS

Identification and characterisation of the gene cluster for the anti-MRSA antibiotic bottromycin: expanding the biosynthetic diversity of ribosomal peptides

(2012) William J. K. Crone et al.   Chemical Science

Self-Contained Sequence Representation: Bridging the Gap between Bioinformatics and Cheminformatics

(2011) William L. Chen et al.   Journal of Chemical Information and Modeling

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Diversity of Monomers in Nonribosomal Peptides: towards the Prediction of Origin and Biological Activity

(2010) S. Caboche et al.   JOURNAL OF BACTERIOLOGY

Structural pattern matching of nonribosomal peptides

(2009) Ségolène Caboche et al.   BMC STRUCTURAL BIOLOGY

On the Art of Compiling and Using 'Drug-Like' Chemical Fragment Spaces

(2008) Jörg Degen et al.   ChemMedChem

Nonribosomal Peptide Synthetases Involved in the Production of Medically Relevant Natural Products

(2008) Elizabeth A. Felnagle et al.   MOLECULAR PHARMACEUTICS

Morphing peptide backbones into heterocycles

(2008) C. T. Walsh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA