Ecological and Evolutionary Processes Shaping Viral Genetic Diversity
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Ecological and Evolutionary Processes Shaping Viral Genetic Diversity
Authors
Keywords
-
Journal
Viruses-Basel
Volume 11, Issue 3, Pages 220
Publisher
MDPI AG
Online
2019-03-05
DOI
10.3390/v11030220
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The genomic basis of Red Queen dynamics during rapid reciprocal host–pathogen coevolution
- (2019) Andrei Papkou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A clash of ideas – the varying uses of the ‘species’ term in virology and their utility for classifying viruses in metagenomic datasets
- (2018) Peter Simmonds JOURNAL OF GENERAL VIROLOGY
- Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes
- (2018) Miaoyan Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Eco-evolutionary feedbacks promote fluctuating selection and long-term stability of antagonistic networks
- (2018) Cecilia Siliansky de Andreazzi et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Joint coevolutionary–epidemiological models dampen Red Queen cycles and alter conditions for epidemics
- (2018) Ailene MacPherson et al. THEORETICAL POPULATION BIOLOGY
- Experimental Studies of Evolutionary Dynamics in Microbes
- (2018) Ivana Cvijović et al. TRENDS IN GENETICS
- Detecting signatures of positive selection in non-model species using genomic data
- (2018) Hannah Weigand et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Population size changes and selection drive patterns of parallel evolution in a host–virus system
- (2018) Jens Frickel et al. Nature Communications
- Collective properties of viral infectivity
- (2018) Rafael Sanjuán Current Opinion in Virology
- Reversed predator-prey cycles are driven by the amplitude of prey oscillations
- (2018) Ellen van Velzen et al. Ecology and Evolution
- A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters ( Crassostrea gigas )
- (2018) Alejandro P. Gutierrez et al. G3-Genes Genomes Genetics
- Why Are Algal Viruses Not Always Successful?
- (2018) Elena Horas et al. Viruses-Basel
- Investigation of recombination-intense viral groups and their genes in the Earth’s virome
- (2018) Jan P. Meier-Kolthoff et al. Scientific Reports
- Eco‐evolutionary feedbacks—Theoretical models and perspectives
- (2018) Lynn Govaert et al. FUNCTIONAL ECOLOGY
- Prisoners of war — host adaptation and its constraints on virus evolution
- (2018) Peter Simmonds et al. NATURE REVIEWS MICROBIOLOGY
- Keeping Pace with the Red Queen: Identifying the Genetic Basis of Susceptibility to Infectious Disease
- (2017) Ailene MacPherson et al. GENETICS
- Rapid evolution of hosts begets species diversity at the cost of intraspecific diversity
- (2017) Jens Frickel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Revised time scales of RNA virus evolution based on spatial information
- (2017) Moritz Saxenhofer et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Host–parasite fluctuating selection in the absence of specificity
- (2017) Alex Best et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship
- (2017) Torill Johannessen et al. Viruses-Basel
- Long-term genomic coevolution of host-parasite interaction in the natural environment
- (2017) Elina Laanto et al. Nature Communications
- Identifying coevolving loci using interspecific genetic correlations
- (2017) Scott L. Nuismer et al. Ecology and Evolution
- Keeping Pace with the Red Queen: Identifying the Genetic Basis of Susceptibility to Infectious Disease
- (2017) Ailene MacPherson et al. GENETICS
- Giant Viruses of Amoebae: A Journey Through Innovative Research and Paradigm Changes
- (2017) Philippe Colson et al. Annual Review of Virology
- Disentangling eco-evolutionary dynamics of predator-prey coevolution: the case of antiphase cycles
- (2017) Ellen van Velzen et al. Scientific Reports
- Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
- (2016) Sean Hoban et al. AMERICAN NATURALIST
- Eco-evolutionary dynamics in a coevolving host-virus system
- (2016) Jens Frickel et al. ECOLOGY LETTERS
- On the importance of skewed offspring distributions and background selection in virus population genetics
- (2016) K K Irwin et al. HEREDITY
- A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug Resistance
- (2016) Li Jiang et al. JOURNAL OF MOLECULAR BIOLOGY
- Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing
- (2016) Justin Jee et al. NATURE
- Redefining the invertebrate RNA virosphere
- (2016) Mang Shi et al. NATURE
- Determinants of genetic diversity
- (2016) Hans Ellegren et al. NATURE REVIEWS GENETICS
- Host coevolution alters the adaptive landscape of a virus
- (2016) Alita R. Burmeister et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Can Population Genetics Adapt to Rapid Evolution?
- (2016) Philipp W. Messer et al. TRENDS IN GENETICS
- Host–parasite coevolution: why changing population size matters
- (2016) Andrei Papkou et al. ZOOLOGY
- Host-Parasite Coevolutionary Dynamics with Generalized Success/Failure Infection Genetics
- (2015) Jan Engelstädter AMERICAN NATURALIST
- Host-parasite coevolution in populations of constant and variable size
- (2015) Yixian Song et al. BMC EVOLUTIONARY BIOLOGY
- Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences
- (2015) Marcos Pérez-Losada et al. INFECTION GENETICS AND EVOLUTION
- On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity
- (2015) Nicholas Renzette et al. MOLECULAR ECOLOGY
- The consequences of not accounting for background selection in demographic inference
- (2015) Gregory B. Ewing et al. MOLECULAR ECOLOGY
- Detecting balancing selection in genomes: limits and prospects
- (2015) Anna Fijarczyk et al. MOLECULAR ECOLOGY
- Limits and patterns of cytomegalovirus genomic diversity in humans
- (2015) Nicholas Renzette et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Role of Human Transportation Networks in Mediating the Genetic Structure of Seasonal Influenza in the United States
- (2015) Brooke A. Bozick et al. PLoS Pathogens
- Spatial Structure, Transmission Modes and the Evolution of Viral Exploitation Strategies
- (2015) Thomas W. Berngruber et al. PLoS Pathogens
- Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophages
- (2014) A. Betts et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population mixing promotes arms race host-parasite coevolution
- (2014) P. Gomez et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The early spread and epidemic ignition of HIV-1 in human populations
- (2014) N. R. Faria et al. SCIENCE
- Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
- (2014) S. K. Gire et al. SCIENCE
- Thinking too positive? Revisiting current methods of population genetic selection inference
- (2014) Claudia Bank et al. TRENDS IN GENETICS
- Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective
- (2014) Matthieu Foll et al. PLoS Genetics
- Genetic Diversity in the Interference Selection Limit
- (2014) Benjamin H. Good et al. PLoS Genetics
- Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
- (2014) Pleuni S. Pennings et al. PLoS Genetics
- The Evolution and Genetics of Virus Host Shifts
- (2014) Ben Longdon et al. PLoS Pathogens
- Navigating the Devious Course of Evolution: The Importance of Mechanistic Models for Identifying Eco-Evolutionary Dynamics in Nature
- (2013) Shishi Luo et al. AMERICAN NATURALIST
- Genetic Draft, Selective Interference, and Population Genetics of Rapid Adaptation
- (2013) Richard A. Neher Annual Review of Ecology Evolution and Systematics
- Detecting Natural Selection in Genomic Data
- (2013) Joseph J. Vitti et al. Annual Review of Genetics
- Antagonistic Coevolution of Marine Planktonic Viruses and Their Hosts
- (2013) Jennifer B.H. Martiny et al. Annual Review of Marine Science
- Lotka–Volterra dynamics kills the Red Queen: population size fluctuations and associated stochasticity dramatically change host-parasite coevolution
- (2013) Chaitanya S Gokhale et al. BMC EVOLUTIONARY BIOLOGY
- The Dynamics of Genetic Draft in Rapidly Adapting Populations
- (2013) Katya Kosheleva et al. GENETICS
- Background Selection 20 Years on
- (2013) Brian Charlesworth JOURNAL OF HEREDITY
- Statistical questions in experimental evolution
- (2013) Michael M Desai JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Understanding Bacteriophage Specificity in Natural Microbial Communities
- (2013) Britt Koskella et al. Viruses-Basel
- Rapid Intrahost Evolution of Human Cytomegalovirus Is Shaped by Demography and Positive Selection
- (2013) Nicholas Renzette et al. PLoS Genetics
- Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation
- (2012) Peter H. Thrall et al. ECOLOGY LETTERS
- The functional genomics of an eco-evolutionary feedback loop: linking gene expression, trait evolution, and community dynamics
- (2012) Lutz Becks et al. ECOLOGY LETTERS
- THE DYNAMICS OF RECIPROCAL SELECTIVE SWEEPS OF HOST RESISTANCE AND A PARASITE COUNTER-ADAPTATION INDROSOPHILA
- (2012) Lena Wilfert et al. EVOLUTION
- Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses
- (2012) Steven A J Declerck et al. ISME Journal
- Application of next-generation sequencing technologies in virology
- (2012) A. D. Radford et al. JOURNAL OF GENERAL VIROLOGY
- Recent Progress in Polymorphism-Based Population Genetic Inference
- (2012) Jessica L. Crisci et al. JOURNAL OF HEREDITY
- Rapid diversification of coevolving marine Synechococcus and a virus
- (2012) M. F. Marston et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Potential for Respiratory Droplet-Transmissible A/H5N1 Influenza Virus to Evolve in a Mammalian Host
- (2012) C. A. Russell et al. SCIENCE
- Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda
- (2012) J. R. Meyer et al. SCIENCE
- Emergent Neutrality in Adaptive Asexual Evolution
- (2011) Stephan Schiffels et al. GENETICS
- Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations
- (2011) Gregory I. Lang et al. GENETICS
- A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase
- (2011) Trevor Hinkley et al. NATURE GENETICS
- Bacteria-Phage Antagonistic Coevolution in Soil
- (2011) P. Gomez et al. SCIENCE
- Generalized population models and the nature of genetic drift
- (2011) Ricky Der et al. THEORETICAL POPULATION BIOLOGY
- Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins
- (2011) Sergey Kryazhimskiy et al. PLoS Genetics
- When Is Correlation Coevolution?
- (2010) Scott L. Nuismer et al. AMERICAN NATURALIST
- Viral Mutation Rates
- (2010) R. Sanjuan et al. JOURNAL OF VIROLOGY
- Genetic basis of infectivity evolution in a bacteriophage
- (2010) PAULINE D. SCANLAN et al. MOLECULAR ECOLOGY
- Antagonistic coevolution accelerates molecular evolution
- (2010) Steve Paterson et al. NATURE
- Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists
- (2009) Gabriela Aguileta et al. INFECTION GENETICS AND EVOLUTION
- Effective population size and patterns of molecular evolution and variation
- (2009) Brian Charlesworth NATURE REVIEWS GENETICS
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- Which ecologically important traits are most likely to evolve rapidly?
- (2009) John N. Thompson OIKOS
- Ecological Dynamics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa and Its Cyanophages in Freshwater
- (2008) M. Yoshida et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Rapid evolution buffers ecosystem impacts of viruses in a microbial food web§
- (2008) Jay T. Lennon et al. ECOLOGY LETTERS
- Coalescence Times and FST Under a Skewed Offspring Distribution Among Individuals in a Population
- (2008) B. Eldon et al. GENETICS
- Estimating the Per-Base-Pair Mutation Rate in the Yeast Saccharomyces cerevisiae
- (2008) Gregory I. Lang et al. GENETICS
- Understanding the limits to generalizability of experimental evolutionary models
- (2008) Samantha E. Forde et al. NATURE
- Rates of evolutionary change in viruses: patterns and determinants
- (2008) Siobain Duffy et al. NATURE REVIEWS GENETICS
- Growth of an RNA virus in single cells reveals a broad fitness distribution
- (2008) Ying Zhu et al. VIROLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation