A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum

(2017) Xueqing Maggie Lu et al.   NUCLEIC ACIDS RESEARCH

Antibody-independent mechanisms regulate the establishment of chronic Plasmodium infection

(2017) Thibaut Brugat et al.   Nature Microbiology

Signatures of malaria-associated pathology revealed by high-resolution whole-blood transcriptomics in a rodent model of malaria

(2017) Jing-wen Lin et al.   Scientific Reports

Evaluation and Optimization of Blood Micro-Sampling Methods: Serial Sampling in a Cross-Over Design from an Individual Mouse

(2016) Nita J Patel et al.   JOURNAL OF PHARMACY AND PHARMACEUTICAL SCIENCES

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Integrated analysis of the Plasmodium species transcriptome

(2016) Regina Hoo et al.   EBioMedicine

New insights into the Plasmodium vivax transcriptome using RNA-Seq

(2016) Lei Zhu et al.   Scientific Reports

Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

(2015) Philip J. Shaw et al.   BMC GENOMICS

Using Improved Serial Blood Sampling Method of Mice to Study Pharmacokinetics and Drug–Drug Interaction

(2015) Ayahisa Watanabe et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Plasmodium knowlesi gene expression differs in ex vivo compared to in vitro blood-stage cultures

(2015) Stacey A Lapp et al.   MALARIA JOURNAL

Commit and Transmit: Molecular Players in Plasmodium Sexual Development and Zygote Differentiation

(2015) David S. Guttery et al.   TRENDS IN PARASITOLOGY

Capillary microsampling of whole blood for mouse PK studies: an easy route to serial blood sampling

(2015) Walter Korfmacher et al.   Bioanalysis

Towards genome-wide experimental genetics in thein vivomalaria model parasitePlasmodium berghei

(2015) Joachim M. Matz et al.   Pathogens and Global Health

Plasmodium P-Type Cyclin CYC3 Modulates Endomitotic Growth during Oocyst Development in Mosquitoes

(2015) Magali Roques et al.   PLoS Pathogens

subSeq: Determining Appropriate Sequencing Depth Through Efficient Read Subsampling

(2014) David G. Robinson et al.   BIOINFORMATICS

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

(2014) Thomas D Otto et al.   BMC BIOLOGY

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

(2014) T Siegel et al.   BMC GENOMICS

Interactive transcriptome analysis of malaria patients and infectingPlasmodium falciparum

(2014) Junya Yamagishi et al.   GENOME RESEARCH

Post-transcriptional silencing ofUIS4inPlasmodium bergheisporozoites is important for host switch

(2014) Olivier Silvie et al.   MOLECULAR MICROBIOLOGY

Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance

(2014) S. Mok et al.   SCIENCE

Interferon-Mediated Innate Immune Responses against Malaria Parasite Liver Stages

(2014) Jessica L. Miller et al.   Cell Reports

Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages

(2014) Florence Caro et al.   eLife

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Perturbations ofPlasmodium Puf2 expression and RNA-seq of Puf2-deficient sporozoites reveal a critical role in maintaining RNA homeostasis and parasite transmissibility

(2013) Scott E. Lindner et al.   CELLULAR MICROBIOLOGY

Vector transmission regulates immune control of Plasmodium virulence

(2013) Philip J. Spence et al.   NATURE

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum

(2013) Evelien M Bunnik et al.   GENOME BIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS)

(2012) Jennifer Lawton et al.   BMC GENOMICS

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples

(2012) Meera Venkatesan et al.   MALARIA JOURNAL

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Discovery pharmacokinetic studies in mice using serial microsampling, dried blood spots and microbore LC–MS/MS

(2012) Sadayappan V Rahavendran et al.   Bioanalysis

The relevance of non-human primate and rodent malaria models for humans

(2011) Jean Langhorne et al.   MALARIA JOURNAL

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

The contribution of Plasmodium chabaudi to our understanding of malaria

(2011) Robin Stephens et al.   TRENDS IN PARASITOLOGY

Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation

(2010) R. Yang et al.   BIOINFORMATICS

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development

(2010) Gunnar R. Mair et al.   PLoS Pathogens

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum

(2009) Guangan Hu et al.   NATURE BIOTECHNOLOGY

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate

(2008) Onguma Natalang et al.   BMC GENOMICS

Improved Pharmacokinetic and Bioavailability Support of Drug Discovery Using Serial Blood Sampling in Mice

(2008) Sean X. Peng et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Evidence of Artemisinin-Resistant Malaria in Western Cambodia

(2008) Harald Noedl et al.   NEW ENGLAND JOURNAL OF MEDICINE

Plasmodium falciparum Transcriptome Analysis Reveals Pregnancy Malaria Associated Gene Expression

(2008) Nicaise Tuikue Ndam et al.   PLoS One

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A combined transcriptome and proteome survey of malaria parasite liver stages

(2008) A. S. Tarun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA