A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies

Geographic Range Shifts Do Not Erase the Historic Signal of Speciation in Mammals

(2015) Marcel Cardillo   AMERICAN NATURALIST

Model Adequacy and the Macroevolution of Angiosperm Functional Traits

(2015) Matthew W. Pennell et al.   AMERICAN NATURALIST

Iterative adaptive radiations of fossil canids show no evidence for diversity-dependent trait evolution

(2015) Graham J. Slater   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement errors should always be incorporated in phylogenetic comparative analysis

(2015) Daniele Silvestro et al.   Methods in Ecology and Evolution

A Novel Bayesian Method for Inferring and Interpreting the Dynamics of Adaptive Landscapes from Phylogenetic Comparative Data

(2014) Josef C. Uyeda et al.   SYSTEMATIC BIOLOGY

Competition and constraint drove Cope's rule in the evolution of giant flying reptiles

(2014) Roger B. J. Benson et al.   Nature Communications

Correction to ‘Phylogenetic evidence for a shift in the mode of mammalian body size evolution at the Cretaceous-Palaeogene boundary’, and a note on fitting macroevolutionary models to comparative paleontological data sets

(2014) Graham J. Slater   Methods in Ecology and Evolution

Intrinsic inference difficulties for trait evolution with Ornstein-Uhlenbeck models

(2014) Lam Si Tung Ho et al.   Methods in Ecology and Evolution

Asymptotic theory with hierarchical autocorrelation: Ornstein–Uhlenbeck tree models

(2013) Lam Si Tung Ho et al.   ANNALS OF STATISTICS

An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology

(2013) Matthew W. Pennell et al.   Annals of the New York Academy of Sciences

Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes

(2013) Sebastian Höhna   BIOINFORMATICS

Macroevolution of life-history traits in passerine birds: adaptation and phylogenetic inertia

(2013) Jason Pienaar et al.   ECOLOGY LETTERS

Rates of projected climate change dramatically exceed past rates of climatic niche evolution among vertebrate species

(2013) Ignacio Quintero et al.   ECOLOGY LETTERS

AN ADAPTIVE RADIATION OF FROGS IN A SOUTHEAST ASIAN ISLAND ARCHIPELAGO

(2013) David C. Blackburn et al.   EVOLUTION

Modeling Gene Expression Evolution with an Extended Ornstein–Uhlenbeck Process Accounting for Within-Species Variation

(2013) Rori V. Rohlfs et al.   MOLECULAR BIOLOGY AND EVOLUTION

Robust Regression and Posterior Predictive Simulation Increase Power to Detect Early Bursts of Trait Evolution

(2013) Graham J. Slater et al.   SYSTEMATIC BIOLOGY

SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion

(2013) Travis Ingram et al.   Methods in Ecology and Evolution

Evolutionary Inferences from Phylogenies: A Review of Methods

(2012) Brian C. O'Meara   Annual Review of Ecology Evolution and Systematics

INTEGRATING FOSSILS WITH MOLECULAR PHYLOGENIES IMPROVES INFERENCE OF TRAIT EVOLUTION

(2012) Graham J. Slater et al.   EVOLUTION

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

(2012) Carl Boettiger et al.   EVOLUTION

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION

(2012) Jeremy M. Beaulieu et al.   EVOLUTION

Ecological radiation with limited morphological diversification in salamanders

(2012) T. BLANKERS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anatomical enablers and the evolution of C4photosynthesis in grasses

(2012) Pascal-Antoine Christin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interpreting the Evolutionary Regression: The Interplay Between Observational and Biological Errors in Phylogenetic Comparative Studies

(2012) Thomas F. Hansen et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Comparative Methods as a Statistical Fix: The Dangers of Ignoring an Evolutionary Model

(2011) Rob P. Freckleton et al.   AMERICAN NATURALIST

Phylogenetic conservatism of environmental niches in mammals

(2011) N. Cooper et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MOTMOT: models of trait macroevolution on trees

(2011) Gavin H. Thomas et al.   Methods in Ecology and Evolution

Body Size Evolution in Mammals: Complexity in Tempo and Mode

(2010) Natalie Cooper et al.   AMERICAN NATURALIST

Niche conservatism as an emerging principle in ecology and conservation biology

(2010) John J. Wiens et al.   ECOLOGY LETTERS

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Phylogenetic signal and linear regression on species data

(2010) Liam J. Revell   Methods in Ecology and Evolution

The seven deadly sins of comparative analysis

(2009) R. P. FRECKLETON   JOURNAL OF EVOLUTIONARY BIOLOGY

Phylogenetic Logistic Regression for Binary Dependent Variables

(2009) Anthony R. Ives et al.   SYSTEMATIC BIOLOGY