A Novel Bayesian Method for Inferring and Interpreting the Dynamics of Adaptive Landscapes from Phylogenetic Comparative Data

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

Asymptotic theory with hierarchical autocorrelation: Ornstein–Uhlenbeck tree models

(2013) Lam Si Tung Ho et al.   ANNALS OF STATISTICS

An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology

(2013) Matthew W. Pennell et al.   Annals of the New York Academy of Sciences

Exceptional Convergence on the Macroevolutionary Landscape in Island Lizard Radiations

(2013) D. L. Mahler et al.   SCIENCE

Is there room for punctuated equilibrium in macroevolution?

(2013) Matthew W. Pennell et al.   TRENDS IN ECOLOGY & EVOLUTION

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

(2013) Daniel L. Rabosky et al.   Nature Communications

Testing the link between phenotypic evolution and speciation: an integrated palaeontological and phylogenetic analysis

(2013) Gene Hunt   Methods in Ecology and Evolution

SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion

(2013) Travis Ingram et al.   Methods in Ecology and Evolution

Phenotypic evolution studied by layered stochastic differential equations

(2012) Trond Reitan et al.   Annals of Applied Statistics

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION

(2012) Jeremy M. Beaulieu et al.   EVOLUTION

A phylogenetic comparative method for studying multivariate adaptation

(2012) Krzysztof Bartoszek et al.   JOURNAL OF THEORETICAL BIOLOGY

Interpreting the Evolutionary Regression: The Interplay Between Observational and Biological Errors in Phylogenetic Comparative Studies

(2012) Thomas F. Hansen et al.   SYSTEMATIC BIOLOGY

Phylogenetic Analysis Using Lévy Processes: Finding Jumps in the Evolution of Continuous Traits

(2012) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

The evolution of island gigantism and body size variation in tortoises and turtles

(2011) A. L. Jaffe et al.   Biology Letters

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

The million-year wait for macroevolutionary bursts

(2011) J. C. Uyeda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

Choosing among Partition Models in Bayesian Phylogenetics

(2010) Y. Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Giant boid snake from the Palaeocene neotropics reveals hotter past equatorial temperatures

(2009) Jason J. Head et al.   NATURE

MIPoD: A Hypothesis‐Testing Framework for Microevolutionary Inference from Patterns of Divergence

(2008) Paul A. Hohenlohe et al.   AMERICAN NATURALIST

EVOLUTION TOWARD A NEW ADAPTIVE OPTIMUM: PHENOTYPIC EVOLUTION IN A FOSSIL STICKLEBACK LINEAGE

(2008) Gene Hunt et al.   EVOLUTION

Gradual or pulsed evolution: when should punctuational explanations be preferred?

(2008) Gene Hunt   PALEOBIOLOGY