The regulatory pathway from genes directly activated by maternal factors to muscle structural genes in ascidian embryos

Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos

(2016) Kaoru S. Imai et al.   DEVELOPMENT

A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

(2016) Izumi Oda-Ishii et al.   PLoS Genetics

Genome-wide identification and characterization of transcription start sites and promoters in the tunicateCiona intestinalis

(2015) Rui Yokomori et al.   GENOME RESEARCH

Gene regulatory systems that control gene expression in the Ciona embryo

(2015) Yutaka SATOU et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Suboptimization of developmental enhancers

(2015) E. K. Farley et al.   SCIENCE

Guidelines for the nomenclature of genetic elements in tunicate genomes

(2014) Alberto Stolfi et al.   GENESIS

Functional studies of the Ciona intestinalis myogenic regulatory factor reveal conserved features of chordate myogenesis

(2013) Stephanie A. Izzi et al.   DEVELOPMENTAL BIOLOGY

Functional Brachyury Binding Sites Establish a Temporal Read-out of Gene Expression in the Ciona Notochord

(2013) Lavanya Katikala et al.   PLOS BIOLOGY

A Maternal Factor Unique to Ascidians Silences the Germline via Binding to P-TEFb and RNAP II Regulation

(2011) Gaku Kumano et al.   CURRENT BIOLOGY

Ci-Pem-1 localizes to the nucleus and represses somatic gene transcription in the germline of Ciona intestinalis embryos

(2011) M. Shirae-Kurabayashi et al.   DEVELOPMENT

Evolutionary crossroads in developmental biology: the tunicates

(2011) P. Lemaire   DEVELOPMENT

Genomic cis-regulatory networks in the early Ciona intestinalis embryo

(2010) A. Kubo et al.   DEVELOPMENT

Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis

(2010) J. E. Kugler et al.   JOURNAL OF CELL SCIENCE

Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation

(2010) Yubing Liu et al.   NUCLEIC ACIDS RESEARCH

Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations

(2008) Yutaka Satou et al.   GENOME BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY