Genome-wide association analysis of stalk biomass and anatomical traits in maize

ZmMADS69 functions as a flowering activator through the ZmRap2.7-ZCN8 regulatory module and contributes to maize flowering time adaptation

(2018) Yameng Liang et al.   NEW PHYTOLOGIST

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L .) inbred lines

(2017) Alex B. Brohammer et al.   PLANT JOURNAL

A robust, high-throughput method for computing maize ear, cob, and kernel attributes automatically from images

(2016) Nathan D. Miller et al.   PLANT JOURNAL

The evolutionary landscape of PRC1 core components in green lineage

(2016) Dong-hong Chen et al.   PLANTA

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

(2016) Scott C. Stelpflug et al.   Plant Genome

MaizeGDB update: new tools, data and interface for the maize model organism database

(2015) Carson M. Andorf et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Image analysis of anatomical traits in stalk transections of maize and other grasses

(2015) Sven Heckwolf et al.   Plant Methods

The Genetic Architecture Of Maize Height

(2014) Jason A. Peiffer et al.   GENETICS

Insights into the Maize Pan-Genome and Pan-Transcriptome

(2014) C. N. Hirsch et al.   PLANT CELL

Validation of Potential Reference Genes for qPCR in Maize across Abiotic Stresses, Hormone Treatments, and Tissue Types

(2014) Yueai Lin et al.   PLoS One

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

The complex transcriptional landscape of the anucleate human platelet

(2013) Paul F Bray et al.   BMC GENOMICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Chemical composition and cell wall polysaccharide degradability of pith and rind tissues from mature maize internodes

(2012) Jaime Barros-Rios et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A nucleostemin-like GTPase required for normal apical and floral meristem development in Arabidopsis

(2012) Xiaomin Wang et al.   MOLECULAR BIOLOGY OF THE CELL

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

ZmGA3ox2, a candidate gene for a major QTL,qPH3.1, for plant height in maize

(2012) Feng Teng et al.   PLANT JOURNAL

A Gene Regulatory Network Model for Floral Transition of the Shoot Apex in Maize and Its Dynamic Modeling

(2012) Zhanshan Dong et al.   PLoS One

Genetic dissection of maize phenology using an intraspecific introgression library

(2011) Silvio Salvi et al.   BMC PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

(2011) Kristen L Kump et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Stem characteristics of two forage maize (Zea mays L.) cultivars varying in whole plant digestibility. IV. Changes during the growing season in anatomy and chemical composition in relation to fermentation characteristics of a lower internode

(2011) E.J.M.C. Boon et al.   NJAS-WAGENINGEN JOURNAL OF LIFE SCIENCES

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species

(2011) David G.J. Mann et al.   PLANT BIOTECHNOLOGY JOURNAL

Correlations and QTL detection in maize family per se and testcross progenies for plant height and ear height

(2011) Yan Zhang et al.   PLANT BREEDING

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Genome-Wide Association Study Identifies Candidate Genes That Affect Plant Height in Chinese Elite Maize (Zea mays L.) Inbred Lines

(2011) Jianfeng Weng et al.   PLoS One

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

(2011) J. A. Poland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Brassinosteroid control of sex determination in maize

(2011) T. Hartwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Wall Composition and Ruminant Digestibility of Various Maize Tissues Across Development

(2010) Candice N. Hansey et al.   BioEnergy Research

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Understanding cytokinesis: lessons from fission yeast

(2010) Thomas D. Pollard et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Maize DELLA Proteins dwarf plant8 and dwarf plant9 as Modulators of Plant Development

(2010) Shai J. Lawit et al.   PLANT AND CELL PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice

(2009) R. Komiya et al.   DEVELOPMENT

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Polar gradients of the DYRK-family kinase Pom1 couple cell length with the cell cycle

(2009) Sophie G. Martin et al.   NATURE

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

From dwarves to giants? Plant height manipulation for biomass yield

(2009) Maria G. Salas Fernandez et al.   TRENDS IN PLANT SCIENCE

The Arabidopsis IRX10 and IRX10-LIKE glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation

(2008) Ai-Min Wu et al.   PLANT JOURNAL

Plants to power: bioenergy to fuel the future

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE

Maize and sorghum: genetic resources for bioenergy grasses

(2008) Nicholas C. Carpita et al.   TRENDS IN PLANT SCIENCE