Gene2vec: distributed representation of genes based on co-expression

An integrative functional genomics framework for effective identification of novel regulatory variants in genome–phenome studies

(2018) Junfei Zhao et al.   Genome Medicine

How to Generate a Good Word Embedding

(2016) Siwei Lai et al.   IEEE INTELLIGENT SYSTEMS

Multiscale Embedded Gene Co-expression Network Analysis

(2015) Won-Min Song et al.   PLoS Computational Biology

Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

(2015) Ehsaneddin Asgari et al.   PLoS One

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH