Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

The human splicing code reveals new insights into the genetic determinants of disease

(2014) H. Y. Xiong et al.   SCIENCE

Mining for class-specific motifs in protein sequence classification

(2013) Satish M Srinivasan et al.   BMC BIOINFORMATICS

Visualization of SNPs with t-SNE

(2013) Alexander Platzer   PLoS One

Computational Phenotype Discovery Using Unsupervised Feature Learning over Noisy, Sparse, and Irregular Clinical Data

(2013) Thomas A. Lasko et al.   PLoS One

Physical Motif Clustering within Intrinsically Disordered Nucleoporin Sequences Reveals Universal Functional Features

(2013) David Ando et al.   PLoS One

Higher Nucleoporin-Importinβ Affinity at the Nuclear Basket Increases Nucleocytoplasmic Import

(2013) Mohammad Azimi et al.   PLoS One

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Word Decoding of Protein Amino Acid Sequences with Availability Analysis: A Linguistic Approach

(2012) Kenta Motomura et al.   PLoS One

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Visualization of multiple alignments, phylogenies and gene family evolution

(2010) James B Procter et al.   NATURE METHODS

Predicting intrinsic disorder in proteins: an overview

(2009) Bo He et al.   CELL RESEARCH

Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars

(2009) Yizhi Cai et al.   PLoS Computational Biology

Subfamily specific conservation profiles for proteins based on n-gram patterns

(2008) John K Vries et al.   BMC BIOINFORMATICS

Function and structure of inherently disordered proteins

(2008) A Keith Dunker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY