DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins
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Title
DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins
Authors
Keywords
Ubiquitination, Deep learning, Convolutional neural networks
Journal
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
Publisher
Springer Nature
Online
2019-02-18
DOI
10.1186/s12859-019-2677-9
References
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Related references
Note: Only part of the references are listed.- A New Scheme to Characterize and Identify Protein Ubiquitination Sites
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- Computational methods for ubiquitination site prediction using physicochemical properties of protein sequences
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- UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines
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- Non-canonical pathway network modelling and ubiquitination site prediction through homology modelling of NF-κB
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- SCFβ-TRCP targets MTSS1 for ubiquitination-mediated destruction to regulate cancer cell proliferation and migration
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- (2013) Zhen Chen et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites
- (2013) Xiang Chen et al. BIOINFORMATICS
- Prediction of lysine ubiquitination with mRMR feature selection and analysis
- (2011) Yudong Cai et al. AMINO ACIDS
- Prediction of Lysine Ubiquitylation with Ensemble Classifier and Feature Selection
- (2011) Xiaowei Zhao et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites
- (2011) Tzong-Yi Lee et al. PLoS One
- Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs
- (2011) Zhen Chen et al. PLoS One
- CD-HIT Suite: a web server for clustering and comparing biological sequences
- (2010) Ying Huang et al. BIOINFORMATICS
- Some remarks on protein attribute prediction and pseudo amino acid composition
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- The ubiquitin system
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- Identification, analysis, and prediction of protein ubiquitination sites
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- Atypical ubiquitin chains: new molecular signals. ‘Protein Modifications: Beyond the Usual Suspects’ Review Series
- (2008) Fumiyo Ikeda et al. EMBO REPORTS
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