An event-driven approach for studying gene block evolution in bacteria

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

(2014) Natalie Ward et al.   PLoS One

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Protein-Protein Interactions in the β-Oxidation Part of the Phenylacetate Utilization Pathway

(2012) Andrey M. Grishin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Structural and Functional Studies of the Escherichia coli Phenylacetyl-CoA Monooxygenase Complex

(2011) Andrey M. Grishin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Recurring cluster and operon assembly for Phenylacetate degradation genes

(2009) Fergal J Martin et al.   BMC EVOLUTIONARY BIOLOGY

Identification of mammalian orthologs using local synteny

(2009) Jin Jun et al.   BMC GENOMICS

Origin and evolution of operons and metabolic pathways

(2009) Marco Fondi et al.   RESEARCH IN MICROBIOLOGY

Evaluation of genomic island predictors using a comparative genomics approach

(2008) Morgan GI Langille et al.   BMC BIOINFORMATICS

Persistence drives gene clustering in bacterial genomes

(2008) Gang Fang et al.   BMC GENOMICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS