Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?
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Title
Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?
Authors
Keywords
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Journal
PLoS One
Volume 9, Issue 7, Pages e101850
Publisher
Public Library of Science (PLoS)
Online
2014-07-12
DOI
10.1371/journal.pone.0101850
References
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Note: Only part of the references are listed.- Phylogenomic clustering for selecting non-redundant genomes for comparative genomics
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- On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
- (2012) Paul D. Thomas et al. PLoS Computational Biology
- The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data
- (2012) Xiaoshu Chen et al. PLoS Computational Biology
- Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
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- Adaptive seeds tame genomic sequence comparison
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- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
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