antaRNA: ant colony-based RNA sequence design

Evolutionary solution for the RNA design problem

(2014) A. Esmaili-Taheri et al.   BIOINFORMATICS

A versatile framework for microbial engineering using synthetic non-coding RNAs

(2014) Lei S. Qi et al.   NATURE REVIEWS MICROBIOLOGY

CRISPR-based technologies: prokaryotic defense weapons repurposed

(2014) Rebecca M. Terns et al.   TRENDS IN GENETICS

RNAfbinv: an interactive Java application for fragment-based design of RNA sequences

(2013) L. Weinbrand et al.   BIOINFORMATICS

A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution

(2013) Vladimir Reinharz et al.   BIOINFORMATICS

A novel insight into the mechanism of mammalian selenoprotein synthesis

(2013) O. Kossinova et al.   RNA

Genetic Screens in Human Cells Using the CRISPR-Cas9 System

(2013) Tim Wang et al.   SCIENCE

Improving the Gene-Regulation Ability of Small RNAs by Scaffold Engineering in Escherichia coli

(2013) Yuta Sakai et al.   ACS Synthetic Biology

Frnakenstein: multiple target inverse RNA folding

(2012) Rune B Lyngsø et al.   BMC BIOINFORMATICS

Synthetic biology with RNA: progress report

(2012) Yaakov Benenson   CURRENT OPINION IN CHEMICAL BIOLOGY

Reconstruction of Natural RNA Sequences from RNA Shape, Thermodynamic Stability, Mutational Robustness, and Linguistic Complexity by Evolutionary Computation

(2012) N. Dromi et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Rationally designed families of orthogonal RNA regulators of translation

(2012) Vivek K Mutalik et al.   Nature Chemical Biology

Designing and using RNA scaffolds to assemble proteins in vivo

(2012) Camille J Delebecque et al.   Nature Protocols

De novo design of a synthetic riboswitch that regulates transcription termination

(2012) M. Wachsmuth et al.   NUCLEIC ACIDS RESEARCH

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

(2012) G. Rodrigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNAiFOLD: A CONSTRAINT PROGRAMMING ALGORITHM FOR RNA INVERSE FOLDING AND MOLECULAR DESIGN

(2012) JUAN ANTONIO GARCIA-MARTIN et al.   Journal of Bioinformatics and Computational Biology

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Organization of Intracellular Reactions with Rationally Designed RNA Assemblies

(2011) C. J. Delebecque et al.   SCIENCE

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The emerging field of RNA nanotechnology

(2010) Peixuan Guo   Nature Nanotechnology