Evolutionary solution for the RNA design problem

Frnakenstein: multiple target inverse RNA folding

(2012) Rune B Lyngsø et al.   BMC BIOINFORMATICS

Reconstruction of Natural RNA Sequences from RNA Shape, Thermodynamic Stability, Mutational Robustness, and Linguistic Complexity by Evolutionary Computation

(2012) N. Dromi et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

RNAiFOLD: A CONSTRAINT PROGRAMMING ALGORITHM FOR RNA INVERSE FOLDING AND MOLECULAR DESIGN

(2012) JUAN ANTONIO GARCIA-MARTIN et al.   Journal of Bioinformatics and Computational Biology

Multi-Objective Genetic Algorithm for Pseudoknotted RNA Sequence Design

(2012) Akito Taneda   Frontiers in Genetics

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

(2011) Assaf Avihoo et al.   BMC BIOINFORMATICS

Inverse folding of RNA pseudoknot structures

(2010) James ZM Gao et al.   Algorithms for Molecular Biology

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

An image processing approach to computing distances between RNA secondary structures dot plots

(2009) Tor Ivry et al.   Algorithms for Molecular Biology