RNAfbinv: an interactive Java application for fragment-based design of RNA sequences

Frnakenstein: multiple target inverse RNA folding

(2012) Rune B Lyngsø et al.   BMC BIOINFORMATICS

Reconstruction of Natural RNA Sequences from RNA Shape, Thermodynamic Stability, Mutational Robustness, and Linguistic Complexity by Evolutionary Computation

(2012) N. Dromi et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

A global sampling approach to designing and reengineering RNA secondary structures

(2012) Alex Levin et al.   NUCLEIC ACIDS RESEARCH

RNAiFOLD: A CONSTRAINT PROGRAMMING ALGORITHM FOR RNA INVERSE FOLDING AND MOLECULAR DESIGN

(2012) JUAN ANTONIO GARCIA-MARTIN et al.   Journal of Bioinformatics and Computational Biology

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

(2011) Assaf Avihoo et al.   BMC BIOINFORMATICS

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY